; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G020320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G020320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMediator of RNA polymerase II transcription subunit 2-like
Genome locationchr05:27302677..27303513
RNA-Seq ExpressionLsi05G020320
SyntenyLsi05G020320
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048973.1 mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa]4.3e-2896.3Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
KGN56523.1 hypothetical protein Csa_010072 [Cucumis sativus]2.1e-2795.06Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN+MKVDGSGKKKKGGGGFQVGKKKVKTKLTA AKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
XP_022147302.1 uncharacterized protein LOC111016287 [Momordica charantia]9.0e-2691.36Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKKN MKVDGSGK+KKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
XP_022941890.1 uncharacterized protein LOC111447114 [Cucurbita moschata]2.4e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
XP_030457135.1 uncharacterized protein LOC115678006 [Syzygium oleosum]5.8e-2590.12Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQYEFDL+REK EKEKAAKKLQAKKN MKVDGSGKKKKG GGFQVGK+K+KTKLTA AKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
TrEMBL top hitse value%identityAlignment
A0A0A0L493 Uncharacterized protein1.0e-2795.06Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN+MKVDGSGKKKKGGGGFQVGKKKVKTKLTA AKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A5A7TZC8 Mediator of RNA polymerase II transcription subunit 2-like2.1e-2896.3Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A6J1D208 uncharacterized protein LOC1110162874.4e-2691.36Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRKKQ+EFDL+REK E+EKAAKKLQAKKN MKVDGSGK+KKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A6J1FV29 uncharacterized protein LOC1114471141.1e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A6J1IED7 uncharacterized protein LOC1114732881.1e-2693.83Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKKVKTKLTAAAKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45860.1 unknown protein1.6e-2073.75Show/hide
Query:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD
        MSKKNNL++RKKQ+E++LQ+EK+ ++K  KKL A KN MKVDGSGKKKK  GGF VGKKK+KTKLT  AKAKAAQAMELD
Subjt:  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAA
TAATATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGGTTTCAAGTTGGCAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCTAAAGCTG
CCCAGGCTATGGAGCTTGATAAATGA
mRNA sequenceShow/hide mRNA sequence
AATTGGCCGACCCGGTTCAATATAAAGTTGCCGCATCACATTGTCTAAGCAAATTCGGGCTAGGGTTTAAGAAGACGGTGACCTTCGGGATATCAGCGAGCAATTTTCCG
GCGGCAGGGAGCAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAA
GCTTCAAGCAAAGAAGAATAATATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGGTTTCAAGTTGGCAAGAAAAAAGTGAAGACCAAGTTGACGGCAG
CAGCAAAAGCTAAAGCTGCCCAGGCTATGGAGCTTGATAAATGA
Protein sequenceShow/hide protein sequence
MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK