; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G020370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G020370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2 domain-containing protein
Genome locationchr05:27332303..27335943
RNA-Seq ExpressionLsi05G020370
SyntenyLsi05G020370
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR035892 - C2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17597.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]9.0e-8178.68Show/hide
Query:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH
        +TD CKEICQGGILEVLLVNAKDIRHTNRL                      GKHE ACWNEKFSFELPTS WKNITHIKFRIMETKLL NESVGATVIH
Subjt:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH

Query:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        LGGI+SEGYERGFIEVRPAPYNVVLE+D+TYKGEIKIGFKFF KEEIALMEARE I DGK QR PICSK MNLWRIVWLKL   IGHKNSSS  K Q
Subjt:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]3.6e-8279.7Show/hide
Query:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH
        +TD CKEICQGGILEVLLVNAKDIRHTNRL                      GKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLL NESVGATVIH
Subjt:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH

Query:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        LGGI+SEGYERGFIEVRPAPYNVVLE+D+TYKGEIKIGFKFF KEEIALMEARE I DGK QRKPICSK MNLWRIVWLKL   IGHKNSSS  K Q
Subjt:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

XP_031738549.1 16 kDa phloem protein 2 isoform X1 [Cucumis sativus]4.2e-8675.6Show/hide
Query:  FFHIKVLTISNWKTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKL
        FFH+  + +S+WKTDGCKEICQGGILEVLLVNAKDIRHTNRL                      GKHE+ACWNEKFSFELPTSDW NITHIKFRIMETKL
Subjt:  FFHIKVLTISNWKTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKL

Query:  LKNESVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHK
        L NESVGATVIHLGGI+SEGYERG IEV PAPYNVVLE+D+TYKGEIKIGFKFF KEEIAL EARE I DGK QR+PICSK++NLWRIVWLKL   I HK
Subjt:  LKNESVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHK

Query:  NSSSGLKQQ
        NSSSG K+Q
Subjt:  NSSSGLKQQ

XP_031738550.1 16 kDa phloem protein 2 isoform X2 [Cucumis sativus]3.7e-7476.06Show/hide
Query:  QGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIHLGGIISEGY
        +GGILEVLLVNAKDIRHTNRL                      GKHE+ACWNEKFSFELPTSDW NITHIKFRIMETKLL NESVGATVIHLGGI+SEGY
Subjt:  QGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIHLGGIISEGY

Query:  ERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        ERG IEV PAPYNVVLE+D+TYKGEIKIGFKFF KEEIAL EARE I DGK QR+PICSK++NLWRIVWLKL   I HKNSSSG K+Q
Subjt:  ERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

XP_038885271.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g01580 [Benincasa hispida]1.1e-7877.6Show/hide
Query:  KEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIHLGGII
        ++  +GGILEVLLVNAKDIRHTNRL                      GKHEYACWNEKFSFELPT+DWKNI+HIKFRI+ETKLL NESVGATVIHL GII
Subjt:  KEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIHLGGII

Query:  SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFF KEEIALME RE I DGK QRKPICS +MN+WRIVWLKLLYLIGH+NSSS  KQQ
Subjt:  SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

TrEMBL top hitse value%identityAlignment
A0A1S4DSI8 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g565701.8e-8279.7Show/hide
Query:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH
        +TD CKEICQGGILEVLLVNAKDIRHTNRL                      GKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLL NESVGATVIH
Subjt:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH

Query:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        LGGI+SEGYERGFIEVRPAPYNVVLE+D+TYKGEIKIGFKFF KEEIALMEARE I DGK QRKPICSK MNLWRIVWLKL   IGHKNSSS  K Q
Subjt:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

A0A5A7U647 Putative pentatricopeptide repeat-containing protein2.8e-7270.56Show/hide
Query:  FFHIKVLTISNWKTDGCKEICQ--------GGILEVLLVNAKDIRHTNRL--GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH
        FFH+  + +SNWK    ++           G     + V   +  H  ++  GKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLL NESVGATVIH
Subjt:  FFHIKVLTISNWKTDGCKEICQ--------GGILEVLLVNAKDIRHTNRL--GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH

Query:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        LGGI+SEGYERGFIEVRPAPYNVVLE+D+TYKGEIKIGFKFF KEEIALMEARE I DGK QRKPICSK MNLWRIVWLKL   IGHKNSSS  K Q
Subjt:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

A0A5D3D0Z7 Putative pentatricopeptide repeat-containing protein4.3e-8178.68Show/hide
Query:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH
        +TD CKEICQGGILEVLLVNAKDIRHTNRL                      GKHE ACWNEKFSFELPTS WKNITHIKFRIMETKLL NESVGATVIH
Subjt:  KTDGCKEICQGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH

Query:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        LGGI+SEGYERGFIEVRPAPYNVVLE+D+TYKGEIKIGFKFF KEEIALMEARE I DGK QR PICSK MNLWRIVWLKL   IGHKNSSS  K Q
Subjt:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

A0A6J1ISL7 uncharacterized protein LOC111479016 isoform X11.2e-6769.04Show/hide
Query:  QGGILEVLLVNAKDIRHTNRL-------------------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH
        +GGILEVLLVNA+DI+HTN                                 GKHE  CWNEKFSFELP+SDWKNITHIKFRIME K L NESVGA +IH
Subjt:  QGGILEVLLVNAKDIRHTNRL-------------------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIH

Query:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        LGGIISEGYERGFIEVRPAPYNVVLE+DDTYKGEIKIGFKFF KEEI  MEARE I D KQ+RK I  KVMNLWR VWLKLL L GHK  SSG KQQ
Subjt:  LGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

A0A6J1ISM2 uncharacterized protein LOC111479016 isoform X21.1e-6872.34Show/hide
Query:  QGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIHLGGIISEGY
        +GGILEVLLVNA+DI+HTN                        GKHE  CWNEKFSFELP+SDWKNITHIKFRIME K L NESVGA +IHLGGIISEGY
Subjt:  QGGILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNESVGATVIHLGGIISEGY

Query:  ERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ
        ERGFIEVRPAPYNVVLE+DDTYKGEIKIGFKFF KEEI  MEARE I D KQ+RK I  KVMNLWR VWLKLL L GHK  SSG KQQ
Subjt:  ERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ

SwissProt top hitse value%identityAlignment
Q0JBH9 Elicitor-responsive protein 31.2e-0630.46Show/hide
Query:  GILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKL-LKNESVGATVIHLGGIISEGYE
        G LEVLLV AK + +T+ L                      GK     WNE F F +      N T +  ++M++     ++ VG   I L  I +EG  
Subjt:  GILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKL-LKNESVGATVIHLGGIISEGYE

Query:  RGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQ
             + P  YNVV E++  Y+GEIK+G  F  +++     + E IG  KQ
Subjt:  RGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQ

Q25AG5 Elicitor-responsive protein 31.2e-0630.46Show/hide
Query:  GILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKL-LKNESVGATVIHLGGIISEGYE
        G LEVLLV AK + +T+ L                      GK     WNE F F +      N T +  ++M++     ++ VG   I L  I +EG  
Subjt:  GILEVLLVNAKDIRHTNRL----------------------GKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKL-LKNESVGATVIHLGGIISEGYE

Query:  RGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQ
             + P  YNVV E++  Y+GEIK+G  F  +++     + E IG  KQ
Subjt:  RGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQ

Q9M2T2 16 kDa phloem protein 12.9e-0526.47Show/hide
Query:  GILEVLLVNAKDIRHTNRLGKHE-----------------------YACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLKNES-VGATVIHLGGII
        GILEV L++ K ++ ++ LGK +                          WN+K  +  E P S  D+K I     ++M+     ++  +G   +H+  ++
Subjt:  GILEVLLVNAKDIRHTNRLGKHE-----------------------YACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLKNES-VGATVIHLGGII

Query:  SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKF
          G E+G  E+RP  YN+V + D ++ GE+ IG  +
Subjt:  SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKF

Arabidopsis top hitse value%identityAlignment
AT3G55470.1 Calcium-dependent lipid-binding (CaLB domain) family protein2.0e-0626.47Show/hide
Query:  GILEVLLVNAKDIRHTNRLGKHE-----------------------YACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLKNES-VGATVIHLGGII
        GILEV L++ K ++ ++ LGK +                          WN+K  +  E P S  D+K I     ++M+     ++  +G   +H+  ++
Subjt:  GILEVLLVNAKDIRHTNRLGKHE-----------------------YACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLKNES-VGATVIHLGGII

Query:  SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKF
          G E+G  E+RP  YN+V + D ++ GE+ IG  +
Subjt:  SEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKF

AT3G55470.2 Calcium-dependent lipid-binding (CaLB domain) family protein1.6e-0626.67Show/hide
Query:  GILEVLLVNAKDIRHTNRLGKHE----------------------YACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLKNES-VGATVIHLGGIIS
        GILEV L++ K ++ ++ LGK +                         WN+K  +  E P S  D+K I     ++M+     ++  +G   +H+  ++ 
Subjt:  GILEVLLVNAKDIRHTNRLGKHE----------------------YACWNEKFSF--ELPTS--DWKNITHIKFRIMETKLLKNES-VGATVIHLGGIIS

Query:  EGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKF
         G E+G  E+RP  YN+V + D ++ GE+ IG  +
Subjt:  EGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKF

AT4G00467.1 Calcium-dependent lipid-binding (CaLB domain) family protein2.8e-3241.86Show/hide
Query:  GILEVLLVNAKDIRHTNRLGKHEY----------------------ACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNES-VGATVIHLGGIISEGYE
        GILEV L++A  I HTN +G   Y                      A WN+KF F+ P S WK +T+IK RI++ +L  +   VG T+IHLGGII+EG +
Subjt:  GILEVLLVNAKDIRHTNRLGKHEY----------------------ACWNEKFSFELPTSDWKNITHIKFRIMETKLLKNES-VGATVIHLGGIISEGYE

Query:  RGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLL
        RG+IE++PAPYNVVLE DDT+KGE+K+G +F A +++   +A EL  + K   + + S + NL ++  L+ +
Subjt:  RGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAGTTACAGCCGCCGTTCACTGGGGCTTCGGTTGCTGGCTCCCCTGTCATCAGTCGCCTGGGCCTAAGCACTGCAGATGCCTTCTTCCATATCAAAGTTCTTAC
TATATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGGTGGAATTCTTGAAGTGCTTCTTGTCAATGCCAAAGACATCAGACACACCAATCGACTTGGTAAAC
ATGAATATGCTTGTTGGAATGAGAAGTTTTCATTTGAACTCCCTACATCTGATTGGAAGAACATAACTCATATCAAATTCAGAATCATGGAAACAAAATTGCTGAAAAAT
GAATCCGTCGGAGCTACTGTAATCCACCTTGGTGGAATAATTTCAGAGGGTTATGAAAGAGGATTCATAGAAGTTAGGCCAGCTCCATACAACGTGGTACTCGAGGACGA
CGATACTTATAAAGGAGAAATAAAAATCGGGTTCAAATTCTTCGCCAAAGAAGAAATAGCACTAATGGAAGCAAGAGAGTTAATTGGAGACGGGAAGCAGCAAAGAAAAC
CGATCTGCAGCAAAGTTATGAACTTATGGAGAATTGTATGGTTAAAGTTATTGTACCTCATTGGCCACAAGAATTCTTCCAGCGGACTAAAGCAACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAGTTACAGCCGCCGTTCACTGGGGCTTCGGTTGCTGGCTCCCCTGTCATCAGTCGCCTGGGCCTAAGCACTGCAGATGCCTTCTTCCATATCAAAGTTCTTAC
TATATCCAATTGGAAAACTGATGGATGCAAGGAAATTTGTCAGGGTGGAATTCTTGAAGTGCTTCTTGTCAATGCCAAAGACATCAGACACACCAATCGACTTGGTAAAC
ATGAATATGCTTGTTGGAATGAGAAGTTTTCATTTGAACTCCCTACATCTGATTGGAAGAACATAACTCATATCAAATTCAGAATCATGGAAACAAAATTGCTGAAAAAT
GAATCCGTCGGAGCTACTGTAATCCACCTTGGTGGAATAATTTCAGAGGGTTATGAAAGAGGATTCATAGAAGTTAGGCCAGCTCCATACAACGTGGTACTCGAGGACGA
CGATACTTATAAAGGAGAAATAAAAATCGGGTTCAAATTCTTCGCCAAAGAAGAAATAGCACTAATGGAAGCAAGAGAGTTAATTGGAGACGGGAAGCAGCAAAGAAAAC
CGATCTGCAGCAAAGTTATGAACTTATGGAGAATTGTATGGTTAAAGTTATTGTACCTCATTGGCCACAAGAATTCTTCCAGCGGACTAAAGCAACAGTGAATTGATGAT
TATGCATCTGATTATTTTCAGTTTTTATACGAGTTCCCTTCCTGTTATTTGATGGATCATATTGAACTCAAAGAAGCTTTGAACCATTCATTTTAACAGTACCAATATTG
TTTTGGTAATATTGAACTATTTTTTGATAATTCAATTGTATCAAAGTGCAGGGTTTAAGATGGCAATAAAATGTTGATATCAATGC
Protein sequenceShow/hide protein sequence
MVQLQPPFTGASVAGSPVISRLGLSTADAFFHIKVLTISNWKTDGCKEICQGGILEVLLVNAKDIRHTNRLGKHEYACWNEKFSFELPTSDWKNITHIKFRIMETKLLKN
ESVGATVIHLGGIISEGYERGFIEVRPAPYNVVLEDDDTYKGEIKIGFKFFAKEEIALMEARELIGDGKQQRKPICSKVMNLWRIVWLKLLYLIGHKNSSSGLKQQ