; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G020840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G020840
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr05:27712732..27715246
RNA-Seq ExpressionLsi05G020840
SyntenyLsi05G020840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597110.1 hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2058.82Show/hide
Query:  MMEATR-NENDSKEERELREENEGEAIES---------SSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEA
        MME TR NE+D KEE+E+R++++GEA ++          SSSSFL ++NL+FVLLSL+   S+EDSNG  GE  + KE+EA TTYNI RSSV+K+DVIEA
Subjt:  MMEATR-NENDSKEERELREENEGEAIES---------SSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEA

Query:  KHESRRRLPQKSHTTIKDH
        K E RRR+ Q+ HTTIKDH
Subjt:  KHESRRRLPQKSHTTIKDH

KAG7028573.1 hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-1856.78Show/hide
Query:  MEATR-NENDSKEERELREENEGEAIES---------SSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAK
        ME TR NE+D KEE+E+R++++GEA ++          SSSSFL ++NL+FVLLSL+   S+E+SNG  GE  + KE+EA TTYNI RSSV+K+DVIEAK
Subjt:  MEATR-NENDSKEERELREENEGEAIES---------SSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAK

Query:  HESRRRLPQKSHTTIKDH
         E R R+ Q+ HTTIKDH
Subjt:  HESRRRLPQKSHTTIKDH

KGN56466.1 hypothetical protein Csa_011060 [Cucumis sativus]1.4e-3070.27Show/hide
Query:  MMEATRNENDSKEERELREE-NEGE-AIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRL
        M+E   NEND K+++E+RE+ N GE  +ESSSSSSFL DLNL+FV LSLISPN+NEDSN GNG SM+MKE+E STTYNI +SS+RK+DVIEA+HESRR++
Subjt:  MMEATRNENDSKEERELREE-NEGE-AIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRL

Query:  PQKSHTTIKDH
        PQ+ HTTIKDH
Subjt:  PQKSHTTIKDH

TrEMBL top hitse value%identityAlignment
A0A0A0L8Q3 Uncharacterized protein6.7e-3170.27Show/hide
Query:  MMEATRNENDSKEERELREE-NEGE-AIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRL
        M+E   NEND K+++E+RE+ N GE  +ESSSSSSFL DLNL+FV LSLISPN+NEDSN GNG SM+MKE+E STTYNI +SS+RK+DVIEA+HESRR++
Subjt:  MMEATRNENDSKEERELREE-NEGE-AIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRL

Query:  PQKSHTTIKDH
        PQ+ HTTIKDH
Subjt:  PQKSHTTIKDH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGCTACGAGAAATGAAAACGATTCTAAAGAAGAACGAGAGTTGAGAGAAGAAAATGAAGGAGAAGCCATAGAATCGAGTTCGAGTTCGTCATTTCTACAAGA
TTTGAACCTTATATTTGTGCTTCTTTCATTGATTTCTCCAAATTCAAATGAAGATTCAAATGGTGGCAATGGCGAATCAATGAGAATGAAAGAACTTGAAGCTAGTACAA
CTTACAATATTCCACGATCAAGTGTAAGAAAACAAGATGTTATTGAAGCCAAGCACGAAAGTCGCCGACGATTACCTCAAAAGTCTCATACAACAATAAAGGATCACAGT
ATCTTCGTTGGGCAAAATTACTTGCATCTACCT
mRNA sequenceShow/hide mRNA sequence
AAAAAAACCATTAAAGCAATTTCATAAATTTGAAACTTACAATTGTGAAGGTTTTGACTTTGCGGTCCAAACCTTCCCGACAAGGGAACAAAACAAATTAAACTTCCCAA
AATTCATATTTTCGAGTAAAAAATGATGGAAGCTACGAGAAATGAAAACGATTCTAAAGAAGAACGAGAGTTGAGAGAAGAAAATGAAGGAGAAGCCATAGAATCGAGTT
CGAGTTCGTCATTTCTACAAGATTTGAACCTTATATTTGTGCTTCTTTCATTGATTTCTCCAAATTCAAATGAAGATTCAAATGGTGGCAATGGCGAATCAATGAGAATG
AAAGAACTTGAAGCTAGTACAACTTACAATATTCCACGATCAAGTGTAAGAAAACAAGATGTTATTGAAGCCAAGCACGAAAGTCGCCGACGATTACCTCAAAAGTCTCA
TACAACAATAAAGGATCACAGTATCTTCGTTGGGCAAAATTACTTGCATCTACCT
Protein sequenceShow/hide protein sequence
MMEATRNENDSKEERELREENEGEAIESSSSSSFLQDLNLIFVLLSLISPNSNEDSNGGNGESMRMKELEASTTYNIPRSSVRKQDVIEAKHESRRRLPQKSHTTIKDHS
IFVGQNYLHLP