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Lsi05G020890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G020890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionarabinogalactan peptide 20-like
Genome locationchr05:27732047..27732788
RNA-Seq ExpressionLsi05G020890
SyntenyLsi05G020890
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133836.1 arabinogalactan protein 41 [Cucumis sativus]1.9e-2889.74Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M S NSTSRAF  LFTFF+LIFFILSPLVDA PAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]2.1e-2790.12Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT FALIFFI+SPLVDA   APAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]2.9e-2990.36Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-----APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSRAFSGLFTFF LI FILSPLVDA     APAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-----APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]4.9e-2991.36Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSRAFSGLFTFF LI FILSPLVDA    PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]3.1e-3197.44Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M SSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSY+FFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein9.0e-2989.74Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M S NSTSRAF  LFTFF+LIFFILSPLVDA PAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1D1D7 arabinogalactan peptide 20-like1.0e-2790.12Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT FALIFFI+SPLVDA   APAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like1.4e-2990.36Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-----APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSRAFSGLFTFF LI FILSPLVDA     APAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-----APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IAU1 arabinogalactan peptide 16-like2.0e-2382.5Show/hide
Query:  ASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SS+ST  AFSG FT FALIFFIL PLV A   A APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  ASSNSTSRAFSGLFTFFALIFFILSPLVDA---APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like2.2e-2785.54Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-----APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNST RAFSGLFTFF LI FILSPL+DA     +PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-----APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 165.5e-1562.82Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS +      F  F+ +F ++  L  A + APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 413.9e-1369.35Show/hide
Query:  STSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        S SR F G+ T  ++IF IL P+  A + APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  STSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 224.5e-0961.11Show/hide
Query:  LFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +   F +I  IL P+  + + +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 201.9e-1562.03Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS +     +   FA +F ++SP   A + APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.9e-1662.82Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS +      F  F+ +F ++  L  A + APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 201.3e-1662.03Show/hide
Query:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS +     +   FA +F ++SP   A + APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 412.8e-1469.35Show/hide
Query:  STSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        S SR F G+ T  ++IF IL P+  A + APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  STSRAFSGLFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 223.2e-1061.11Show/hide
Query:  LFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +   F +I  IL P+  + + +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTFFALIFFILSPLVDA-APAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCAATTCTACTTCTAGGGCTTTCTCCGGTCTTTTCACCTTCTTTGCTCTCATCTTCTTCATTCTCTCGCCGCTCGTTGACGCCGCCCCTGCTCCCGCTCC
CGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTTCTGATGCTGGTGGCATTGGTTCTCACGTACCTTATTCACCCTCTCGATGCATCTTCCTACA
ACTTTTTTCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
GTTTCTTCTCTATTCTCTCTATTTATTTATTTATTTATTTATAAAACGAAATCACCACATTATCCTCCGCCCCACTACTCTCCTTCTCTCTCCTTCTTCAACATTTTCAT
TTTGATCGGAGCTTCCACAGAATTTGTTCCTTTGGAGAAGGAGACCACCATCAATGGCGTCCTCCAATTCTACTTCTAGGGCTTTCTCCGGTCTTTTCACCTTCTTTGCT
CTCATCTTCTTCATTCTCTCGCCGCTCGTTGACGCCGCCCCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTTCTGATGCT
GGTGGCATTGGTTCTCACGTACCTTATTCACCCTCTCGATGCATCTTCCTACAACTTTTTTCTGAATTGAGATCCTAGGATTGTAGCAACGTAGGCGCTGTTTGTGGACG
TTTGAGAAGGAACGAGGCCCAACTTTCTCTCTCTTTCTGTGATAAATGTGTATATTGGGTTTCGCAGATTTTGATCAATTGCTCCATTTATTCAATTGTTTATTCGATTA
CTTCTTTCTTTTTTCTTTT
Protein sequenceShow/hide protein sequence
MASSNSTSRAFSGLFTFFALIFFILSPLVDAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN