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Lsi05G021900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G021900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein 230
Genome locationchr05:28517126..28519103
RNA-Seq ExpressionLsi05G021900
SyntenyLsi05G021900
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005776 - autophagosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008590 - Transmembrane protein 230/134
IPR044234 - Transmembrane protein 230


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459349.1 PREDICTED: transmembrane protein 230 [Cucumis melo]2.9e-5495.54Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

XP_022961740.1 transmembrane protein 230-like [Cucurbita moschata]8.4e-5496.43Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGS LLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

XP_022990725.1 transmembrane protein 230-like [Cucurbita maxima]9.3e-5395.54Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        R+VRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGY FASIPDY
Subjt:  ANGYRFASIPDY

XP_023521905.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo]2.9e-5497.32Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

XP_038889462.1 transmembrane protein 230 [Benincasa hispida]9.3e-5394.64Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RNVRY SLA DDNDLDSEGS YDPRFYYTPKAFDKIPWKSIALA+FLL+LG LLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

TrEMBL top hitse value%identityAlignment
A0A0A0KXG1 Transmembrane protein 2302.2e-5292.86Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RNVRYS L  DDND+DSEG++ DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

A0A1S3C9X7 Transmembrane protein 2301.4e-5495.54Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RN+RYSSLA DDND+DSEGSR+DPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

A0A6J1HAY7 Transmembrane protein 2304.1e-5496.43Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RNVRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGS LLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

A0A6J1JQW3 Transmembrane protein 2304.5e-5395.54Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        R+VRYSSLA DDNDLD EGS+YDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGY FASIPDY
Subjt:  ANGYRFASIPDY

A0A6J1K312 Transmembrane protein 2306.5e-5291.07Show/hide
Query:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
        RNVRYSSL+ DDNDLD +G+++DPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG
Subjt:  RNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
        ANGYRFASIPDY
Subjt:  ANGYRFASIPDY

SwissProt top hitse value%identityAlignment
Q5BJP5 Transmembrane protein 2302.6e-1340Show/hide
Query:  SRNVRYSSL-APDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYA
        S  V+YS L + DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA
Subjt:  SRNVRYSSL-APDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYA

Query:  WRGANGYRFASIPDY
         +G  GY +  IPD+
Subjt:  WRGANGYRFASIPDY

Q5R8X3 Transmembrane protein 2302.0e-1341.23Show/hide
Query:  SRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAW
        S  V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA 
Subjt:  SRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAW

Query:  RGANGYRFASIPDY
        +G  GY +  IPD+
Subjt:  RGANGYRFASIPDY

Q5ZLH4 Transmembrane protein 2301.2e-1340Show/hide
Query:  SRNVRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYA
        S  V+YS LA  DD  +D +  +  P          KIP+K+IALA+ L ++G+ L+ +   +L G+++ G   +A  +L +G L FLPGFY  RIAYYA
Subjt:  SRNVRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYA

Query:  WRGANGYRFASIPDY
         +G  GY +  IPD+
Subjt:  WRGANGYRFASIPDY

Q8CIB6 Transmembrane protein 2301.2e-1340.87Show/hide
Query:  SRNVRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYA
        S  V+YS LA  DD  +D +  +  P          KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA
Subjt:  SRNVRYSSLA-PDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYA

Query:  WRGANGYRFASIPDY
         +G  GY +  IPD+
Subjt:  WRGANGYRFASIPDY

Q96A57 Transmembrane protein 2301.2e-1341.23Show/hide
Query:  SRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAW
        S  V+YS L+  D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L+G+++ G   +A  +L +G L FLPGFY  RIAYYA 
Subjt:  SRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAW

Query:  RGANGYRFASIPDY
        +G  GY +  IPD+
Subjt:  RGANGYRFASIPDY

Arabidopsis top hitse value%identityAlignment
AT2G19350.1 Eukaryotic protein of unknown function (DUF872)1.9e-1143.24Show/hide
Query:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP
        P K I+LA+ LL+ G+L + L +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F++IP
Subjt:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP

AT3G29170.1 Eukaryotic protein of unknown function (DUF872)9.0e-3864.1Show/hide
Query:  RNVRYSSLAPDDNDLD-----SEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAY
        R+VRY+ L  D++D        E   +DPRF Y+PKAFD++PWKSIALA+FLL LG LLL LS+F+  GHM G+ SQ Y LL LG LTFLPGFYETRIAY
Subjt:  RNVRYSSLAPDDNDLD-----SEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAY

Query:  YAWRGANGYRFASIPDY
        Y+WRGA GYRFA+IP Y
Subjt:  YAWRGANGYRFASIPDY

AT4G29850.1 Eukaryotic protein of unknown function (DUF872)3.2e-1143.24Show/hide
Query:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP
        P K IALA+ LL+ G+L +   +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F++IP
Subjt:  PWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGGAATGTTCGTTACAGCTCCCTTGCCCCTGATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAA
GATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTTTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCAC
AAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCC
ATTCCCGATTACTAA
mRNA sequenceShow/hide mRNA sequence
TAACAAGTTGATTTAGCCAAAAAGAATTGTGGGCACTGCCCAACTGAAAAGGAGATAAAAGAAATCATACCCCATGTCACGGAATGTTCGTTACAGCTCCCTTGCCCCTG
ATGATAACGATCTCGATTCAGAGGGAAGTCGATATGACCCTCGCTTTTACTATACCCCAAAAGCTTTTGACAAGATCCCGTGGAAATCCATCGCTCTTGCTCTCTTCCTT
TTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGCCTTTTAGCATTGGGGTTTCTTACCTT
CCTCCCAGGCTTTTATGAGACTAGGATTGCATATTATGCATGGAGAGGGGCCAATGGATATCGCTTTGCATCCATTCCCGATTACTAAGGTGTTCCTATCTTGATGGTGT
ATGCTTGTCCCATCTCTCTCTCAATGTAAAACTATCATATAAAGTCAGAAAAATGGTTTGTACAGAACCACGTCTCTTAAGTTTGTAACGTATTTGTCGTTTTTCCTCAT
TCTCATAGGTTGTTTAGGATTAGAAAAATGATAAATGTTGTAGCTTTAATTCATTAACTTGACAAGTCTTGTAGTTAAACTCAAAACCTTTATGCCAATGCAAATACTTC
GAGTGAGATTATTCCAACGACTAACTACGTGGAGCAAGGTTTGCGTAGAATTTGAAGTTTGTCTGGATTACATTATGTAGAAGAGAACATTTGTTTCGTAACAAGAGACT
AGGTGAATCTTTAGTTGCAGTTGCTGATGCTGATGCTTTTGTGAATGCACATCCGCGACCTCCTTCCCAATTGATTACAGGCCAAC
Protein sequenceShow/hide protein sequence
MSRNVRYSSLAPDDNDLDSEGSRYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFAS
IPDY