CuGenDBv2

Gene ID	Lsi05G022010
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Late cornified envelope protein 1E
Genome location	chr05:28577295..28577966
RNA-Seq Expression	Lsi05G022010
Synteny	Lsi05G022010
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048831.1 uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa]

4.3e-42

76.32

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT RPA+        T S KD K    IT+IRSS AGLPS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

XP_008437789.1 PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]

4.3e-42

76.32

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT RPA+        T S KD K    IT+IRSS AGLPS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

XP_022924678.1 uncharacterized protein LOC111432109 [Cucurbita moschata]

5.5e-45

74.56

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T RP+ A ANN  G  S K HK+TDQIT+ +SS  G+PS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

XP_023526855.1 uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]

3.2e-45

75.44

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T RP  A ANN  G  S K HKITDQIT+ +SS  G+PS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

XP_038904003.1 uncharacterized protein LOC120090420 [Benincasa hispida]

1.0e-43

76.52

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITD-QITQIRSSGAGLPSS
        MD NRPLCCLCGDVGF A LFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRS+QRT RP SAT          KDHKI+D QIT+ RSS AGLPS 
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITD-QITQIRSSGAGLPSS

Query:  RPAPRRYKLLKDVMC
        RPAPRRYKLLKDVMC
Subjt:  RPAPRRYKLLKDVMC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5P1 Uncharacterized protein

4.7e-42

75.44

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLN PLCCLCGDVGFPAKLFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRSEQRT RPA A+      T S K +KIT++    RSS  GLPS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

A0A1S3AVF1 uncharacterized protein LOC103483122

2.1e-42

76.32

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT RPA+        T S KD K    IT+IRSS AGLPS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

A0A5D3DB67 Uncharacterized protein

2.1e-42

76.32

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT RPA+        T S KD K    IT+IRSS AGLPS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

A0A6J1ED69 uncharacterized protein LOC111432109

2.7e-45

74.56

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR
        MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T RP+ A ANN  G  S K HK+TDQIT+ +SS  G+PS R
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSR

Query:  PAPRRYKLLKDVMC
        PAPRRYKLLKDVMC
Subjt:  PAPRRYKLLKDVMC

A0A6J1IH20 uncharacterized protein LOC111472884 isoform X1

9.5e-27

64.22

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Query:  PLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRR
        P+CCLCGDVGFPA LFRC  CS+RFQHSYCSNYY GES +AI +VCDWCR E+R  R  SA      G  S K  K + Q  + R+SG G+PS R APRR
Subjt:  PLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRR

Query:  YKLLKDVMC
        YKLLKDVMC
Subjt:  YKLLKDVMC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02070.1 unknown protein

3.8e-20

39.23

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Query:  LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQR------------THRPASATANNNSGT----------MSHKDHKITD
        +CC+CGDVGF  KLF C  C  RFQHSYCSNYY G+  +   ++CDWCRS+ R            + +P+S+    N  +          + H +++   
Subjt:  LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQR------------THRPASATANNNSGT----------MSHKDHKITD

Query:  QITQIRSSGAGLPSSRPAPRRYKLLKDVMC
            +   G G+ S + A RRYKLLKDVMC
Subjt:  QITQIRSSGAGLPSSRPAPRRYKLLKDVMC

AT3G60520.1 unknown protein

1.4e-25

48.46

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Query:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKD------HKITDQ-ITQIRSSG
        +DL R +CC+CGDVGF  KLF C  C NRFQHSYCS+YY  E  D I ++CDWC+ E ++   A    N  S   S++       H+I  Q I Q  SS 
Subjt:  MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKD------HKITDQ-ITQIRSSG

Query:  ---------AGLPSSRPAPRRYKLLKDVMC
                  G+PS RPA RRYKLLKDVMC
Subjt:  ---------AGLPSSRPAPRRYKLLKDVMC

Sequences

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CDS sequence

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mRNA sequence

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ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAA
CTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTA
CTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAG
GATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAAT
CCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCG
TTTGCTCTTGAAATAATCTGAATATATATTCAAC

Protein sequence

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MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLK
DVMC

Lsi05G022010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome