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Lsi05G022040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G022040
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationchr05:28613567..28613881
RNA-Seq ExpressionLsi05G022040
SyntenyLsi05G022040
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1225231.1 Protein transport protein Sec61 subunit beta [Morella rubra]1.8e-3195.12Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG  PQRGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_011650635.1 protein transport protein Sec61 subunit beta [Cucumis sativus]2.2e-3296.34Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_022146520.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]9.8e-3398.78Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_022950482.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata]2.8e-3297.56Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_038875187.1 protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]4.0e-3494.44Show/hide
Query:  LLILCQYRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        L IL   RMALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  LLILCQYRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

TrEMBL top hitse value%identityAlignment
A0A0A0L6Y8 Protein transport protein Sec61 subunit beta1.1e-3296.34Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1CXG1 Protein transport protein Sec61 subunit beta4.7e-3398.78Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1EFZ9 Protein transport protein Sec61 subunit beta4.7e-3398.78Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1IH25 Protein transport protein Sec61 subunit beta1.4e-3297.56Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1J088 Protein transport protein Sec61 subunit beta4.7e-3398.78Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGA PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta3.5e-0948.68Show/hide
Query:  MALGGANPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        +A GG +       A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ MS+ FIAFV ILHV+GK
Subjt:  MALGGANPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

P38389 Protein transport protein Sec61 subunit beta1.9e-2680.25Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

P60467 Protein transport protein Sec61 subunit beta1.6e-0643.59Show/hide
Query:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+ GK
Subjt:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

P60468 Protein transport protein Sec61 subunit beta1.6e-0643.59Show/hide
Query:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+ GK
Subjt:  GANPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

Q9HFC7 Protein transport protein Sec61 subunit beta9.6e-0744.93Show/hide
Query:  NPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKL
        N QR  A A+   +R  +T S  +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++ K+
Subjt:  NPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKL

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-2780.25Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-2780.25Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-2780.25Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-2780.25Show/hide
Query:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGANPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein3.8e-2780.77Show/hide
Query:  LGGANPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +GG  PQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGANPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGC
TACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCC
CCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGC
TACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCC
CCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG
Protein sequenceShow/hide protein sequence
MSSAWSIVSLKVPTLLILCQYRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA