CuGenDBv2

Gene ID	Lsi05G022080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	YqgFc domain-containing protein
Genome location	chr05:28653660..28659211
RNA-Seq Expression	Lsi05G022080
Synteny	Lsi05G022080
Gene Ontology terms	GO:0000967 - rRNA 5'-end processing (biological process)
InterPro domains	IPR005227 - Putative pre-16S rRNA nuclease IPR006641 - YqgF/RNase H-like domain IPR012337 - Ribonuclease H-like superfamily IPR037027 - YqgF/RNase H-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582728.1 hypothetical protein SDJN03_22730, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-74

79.49

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Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        GQKLE KLIEIAEQE                 EADEFIIGLPKS DGKETP SNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEAESHMI + L
Subjt:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

XP_022979278.1 uncharacterized protein LOC111479048 [Cucurbita maxima]

1.4e-74

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Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        GQKLE KLIEIAEQE                 EADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEAESHMI + L
Subjt:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

XP_023528266.1 uncharacterized protein LOC111791236 [Cucurbita pepo subsp. pepo]

8.8e-74

79.49

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Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFP QSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        GQKLE KLIEIAEQE                 EADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEAESHMI + L
Subjt:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

XP_038893103.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]

6.3e-80

84.02

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Query:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        R Q FQPFPLQSH +  PTIFCLP  P SLAPLPPSPTLICKCQK ISSI+LPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPL VLELRG
Subjt:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        QKLEVKLIEIAEQE                 EADEFIIGLPKSCDGKETPQSNKIRSIAGRVA RAAERGWRVYLHDEHGTTAEAESHMISK L
Subjt:  QKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

XP_038893121.1 putative pre-16S rRNA nuclease isoform X3 [Benincasa hispida]

6.3e-80

84.02

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Query:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        R Q FQPFPLQSH +  PTIFCLP  P SLAPLPPSPTLICKCQK ISSI+LPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPL VLELRG
Subjt:  RAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        QKLEVKLIEIAEQE                 EADEFIIGLPKSCDGKETPQSNKIRSIAGRVA RAAERGWRVYLHDEHGTTAEAESHMISK L
Subjt:  QKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3L5 YqgFc domain-containing protein

8.9e-64

74.74

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Query:  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKC--QKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
        Q+FQ FPLQ+H L       LPP        P SP LI K     PISSIELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG
Subjt:  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKC--QKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG

Query:  QKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        QKLE KLIEIAEQE                 EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEAESHMIS+ L
Subjt:  QKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

A0A6J1CS97 uncharacterized protein LOC111014097 isoform X3

7.5e-63

70.94

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Query:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR
        M +Q FQPFP QS       LQS TI  LP   +   P+     L C C    + ISSIELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTR
Subjt:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR

Query:  PLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMIS
        PLTVLELRG KLEVKLIEIAEQE                 EADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT+EAE+HMI 
Subjt:  PLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMIS

Query:  KQL
        K L
Subjt:  KQL

A0A6J1CTB8 uncharacterized protein LOC111014097 isoform X1

7.5e-63

70.94

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Query:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR
        M +Q FQPFP QS       LQS TI  LP   +   P+     L C C    + ISSIELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTR
Subjt:  MRAQSFQPFPLQS-----HNLQSPTIFCLPPAPSSLAPLPPSPTLICKC---QKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTR

Query:  PLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMIS
        PLTVLELRG KLEVKLIEIAEQE                 EADEFIIGLPKS DGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT+EAE+HMI 
Subjt:  PLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMIS

Query:  KQL
        K L
Subjt:  KQL

A0A6J1EA74 uncharacterized protein LOC111432185

7.2e-74

79.49

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Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQS  L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        GQKLE KLIEIAEQE                 EADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEAESHMI + L
Subjt:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

A0A6J1IVR0 uncharacterized protein LOC111479048

6.6e-75

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Query:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
        M A  FQPFPLQSH L S  IFC PP PSSL  LPPSP LICKC+  ISS+ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR
Subjt:  MRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELR

Query:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL
        GQKLE KLIEIAEQE                 EADEFIIGLPKS DGKETPQSNKIRSIAGRVAA+AAERGWRVYLHDEHGTTAEAESHMI + L
Subjt:  GQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL

SwissProt top hits

e value

%identity

Alignment

A1SJC8 Putative pre-16S rRNA nuclease

5.6e-07

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Query:  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRV
        R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++       T+L          E ++GLP+S  G+E P + K+R  AGR+
Subjt:  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRV

Query:  AARAAERGWRVYLHDEHGTTAEAES
        AAR A     V L DE  TT  AE+
Subjt:  AARAAERGWRVYLHDEHGTTAEAES

Arabidopsis top hits

e value

%identity

Alignment

AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

2.2e-46

65.71

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Query:  ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETP
        E+PPNA+RRK+D  WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EIAE+E                 EADEFIIGLP+S DGKET 
Subjt:  ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETP

Query:  QSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMI
        QSNKIRS+AGR+A +AAERGWRVY+ DEHGTT+EA   MI
Subjt:  QSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMI

Sequences

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CDS sequence

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ATGATATTTTGGCGCGGCCGCGCGGGTTGTGATGTGCGAAACAGCGGCACCGTGACTGTGAGTGCGGAGCTTCTTCTTCTATCGTGTTGGTTGGAAATAATGCGTGCGCA
AAGTTTCCAACCCTTTCCGCTGCAAAGCCACAATCTTCAGTCTCCGACGATTTTCTGTCTTCCACCAGCCCCTTCCTCTCTTGCTCCTCTGCCTCCATCTCCAACCCTAA
TTTGCAAATGCCAGAAGCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCAGTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGA
ACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACA
GGAAGTATACATCTCTCCCTCTCTGACGATCTTGCGAATGAAATGTTATGAACATGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACGC
CTCAGTCAAACAAAATTCGAAGTATTGCCGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACACGGGACAACAGCAGAAGCGGAA
AGCCATATGATTTCCAAACAATTGGTTGCTAATTGCTATGCTAGTTGCGAACCATTGTTGAATCTCCTTGGCTTGGGCTGGAGAATGCCTCACTGTCTTTGGTGCACTCT
TCTAATCAACTGGAGTTCACCATTTCCTATTATAAAAAGAAAAGGCGAATTTGACAAAGGCAAACAAAATCTAATTGGTGGCATAACAACCCTATTAGTGGTCGTGGTCA
CAGTCTTCTACCGAAGCTCAAAGATTCTCCATCTTTTCAAAAGCACAATGAAATTAGAGCCGGGCCTTTTAAGTCCAAGCACAACTTATTTCAATCACATCATGGCTGTT
AAGCTTAGGAAAAGCACCATCGTTGGGATCCTTGGTAAATATAGGTTCAACATTTTAAATGACAAAGAACTAGAAGAGGACATCGTTGATTTTTATAAACAGCTATATAC
CAAGAAAGCCCTATTACTATCGAAGGGTGCATCTCCTCCCCTATTTCTCCATCATCATCAACGACAAGTCACAAGGCTTGAGGAAAGATCCTAG

mRNA sequence

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Protein sequence

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MIFWRGRAGCDVRNSGTVTVSAELLLLSCWLEIMRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLG
TSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAE
SHMISKQLVANCYASCEPLLNLLGLGWRMPHCLWCTLLINWSSPFPIIKRKGEFDKGKQNLIGGITTLLVVVVTVFYRSSKILHLFKSTMKLEPGLLSPSTTYFNHIMAV
KLRKSTIVGILGKYRFNILNDKELEEDIVDFYKQLYTKKALLLSKGASPPLFLHHHQRQVTRLEERS

Lsi05G022080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome