CuGenDBv2

Gene ID	Lsi05G022090
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	YqgFc domain-containing protein
Genome location	chr05:28661254..28662603
RNA-Seq Expression	Lsi05G022090
Synteny	Lsi05G022090
Gene Ontology terms	GO:0000967 - rRNA 5'-end processing (biological process)
InterPro domains	IPR005227 - Putative pre-16S rRNA nuclease

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008437782.1 PREDICTED: uncharacterized protein LOC103483114 isoform X1 [Cucumis melo]

6.9e-21

91.23

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERYF MSG+G EL+VPKSLVLQDKLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_022144406.1 uncharacterized protein LOC111014097 isoform X1 [Momordica charantia]

4.1e-21

91.23

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_022144417.1 uncharacterized protein LOC111014097 isoform X2 [Momordica charantia]

4.1e-21

91.23

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_038893103.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]

3.7e-22

94.74

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERYFFMSGEG ELVVPKSL+LQDKLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

XP_038893111.1 putative pre-16S rRNA nuclease isoform X2 [Benincasa hispida]

3.7e-22

94.74

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERYFFMSGEG ELVVPKSL+LQDKLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3L5 YqgFc domain-containing protein

6.3e-20

87.72

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERYF  SG+G EL+VPKSLVLQDKLIEGPPTDPDF+D
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A1S3AUT7 uncharacterized protein LOC103483114 isoform X1

3.4e-21

91.23

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERYF MSG+G EL+VPKSLVLQDKLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A6J1CTB8 uncharacterized protein LOC111014097 isoform X1

2.0e-21

91.23

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A6J1CTM3 uncharacterized protein LOC111014097 isoform X2

2.0e-21

91.23

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNKSTRQKK+DAYAAMMVLERY+FMSG+G ELVVPKSLVLQ+KLIEGPPTDPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

A0A6J1IVR0 uncharacterized protein LOC111479048

5.4e-19

85.96

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD
        GLNK+TRQKK+DAYAAMMVLERYF MSGEG ELVVPK  VLQ+KLIEGPP DPDFKD
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.6e-12

58.18

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Query:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF
        GL+KS RQ + DAYAA+++LERYF   G G E+++PKSL LQ K+  G P DPDF
Subjt:  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF

Sequences

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CDS sequence

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mRNA sequence

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ATGACATATTTCTCTTGCGGTTCTCTCAGTGTAAATTGGGTGACTCCCAGACCCTGTCCGTTCAACAGCTATGGACTATGGGGGCTCAATAAATCTACTCGGCAGAAGAA
GGTTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAGCCGAACTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATTG
AGGGACCACCTACAGACCCAGACTTTAAGGATTGAGAATGTGCTTCAGTCAATGAAAAAATAAACTGGGAGACGCCCTCGGTCAGAAGTTGGGAAGTTCCTGATAGTTTT
CTTGAGAGAAAACAAGATTGCTATCAGAAATAGGTATTTATTTCTGTTGAAGTGGAAGAGAACCACTACCTACATAGAAATGGATGGTACTTTGAGACGAGGGTTACTTC
CTCAAAACATGGTCACGAACCTTCCTAATGAAGGCTCAGTTGAAGTTAGCAGTGGTCATGAGATGATACATTTGACATTATATCTTTATAACATCCTTGTTAAAATCTCC
TTCTCACATATTGAATTCACCTAGACTTTGGTTGGTTATATGCACCTTTTACTTGTGCCCGACCCTGATCAGAAATGTAGCGGAAAATTTAAAAAATTTCTTATCAAAGA
AATTAAGTAGATAT

Protein sequence

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MTYFSCGSLSVNWVTPRPCPFNSYGLWGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

Lsi05G022090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome