CuGenDBv2

Gene ID	Lsi05G022130
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	vacuolar protein sorting-associated protein 8 homolog
Genome location	chr05:28712722..28716730
RNA-Seq Expression	Lsi05G022130
Synteny	Lsi05G022130
Gene Ontology terms	GO:0006623 - protein targeting to vacuole (biological process) GO:0034058 - endosomal vesicle fusion (biological process) GO:0005770 - late endosome (cellular component) GO:0030897 - HOPS complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR025941 - Vacuolar protein sorting-associated protein 8, central domain IPR045111 - Vacuolar protein sorting-associated protein Vps41/Vps8

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582725.1 Vacuolar protein sorting-associated protein 8-like protein, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVL+TSKSKRASA+GYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

XP_022924308.1 vacuolar protein sorting-associated protein 8 homolog isoform X1 [Cucurbita moschata]

2.6e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVL+TSKSKRASA+GYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

XP_022924309.1 vacuolar protein sorting-associated protein 8 homolog isoform X2 [Cucurbita moschata]

2.6e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVL+TSKSKRASA+GYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

XP_038883953.1 vacuolar protein sorting-associated protein 8 homolog isoform X1 [Benincasa hispida]

1.2e-28

98.51

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRAS+LGYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

XP_038883954.1 vacuolar protein sorting-associated protein 8 homolog isoform X2 [Benincasa hispida]

1.2e-28

98.51

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRAS+LGYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X7 Uncharacterized protein

2.1e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSK AS+LGYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

A0A1S3AUY3 vacuolar protein sorting-associated protein 8 homolog

2.1e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSK AS+LGYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

A0A5A7U5F6 Vacuolar protein sorting-associated protein 8-like protein

2.1e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSK AS+LGYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

A0A6J1E8S6 vacuolar protein sorting-associated protein 8 homolog isoform X2

1.3e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVL+TSKSKRASA+GYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

A0A6J1EC21 vacuolar protein sorting-associated protein 8 homolog isoform X1

1.3e-28

97.01

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVL+TSKSKRASA+GYKTLVYLKYCFSGLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

SwissProt top hits

e value

%identity

Alignment

Q0P5W1 Vacuolar protein sorting-associated protein 8 homolog

2.0e-07

34.38

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Query:  VIH--LTESRDQWVVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLR------TSKSKRASALGYKTLVYLKYCFSGLAFPPG-ITEVVVGLV
        ++H  +T    Q VV +C ++ LY A+VY++N+G+++F +P+E+L  V+        + +     +G K LVY+  C +G A+P G I E +V LV
Subjt:  VIH--LTESRDQWVVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLR------TSKSKRASALGYKTLVYLKYCFSGLAFPPG-ITEVVVGLV

Q8N3P4 Vacuolar protein sorting-associated protein 8 homolog

2.6e-07

33.33

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Query:  VIH--LTESRDQWVVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLR------TSKSKRASALGYKTLVYLKYCFSGLAFPPG-ITEVVVGLV
        ++H  +T    Q VV +C ++ LY A++Y++N+G+++F +P+E+L  V+        + +     +G K LVY+  C +G A+P G I E +V LV
Subjt:  VIH--LTESRDQWVVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLR------TSKSKRASALGYKTLVYLKYCFSGLAFPPG-ITEVVVGLV

Arabidopsis top hits

e value

%identity

Alignment

AT4G00800.1 transducin family protein / WD-40 repeat family protein

3.4e-26

77.61

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Query:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG
        VVR+CR+HGLY AL+YLFNKGLDDFR+PLEELL VLR S+ +RA+A+GY+ LVYLKYCF GLAFPPG
Subjt:  VVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPG

Sequences

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CDS sequence

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ATGATTGGGTCACACAAAAGTTTGGTAATGGAGCAAATACTTCTCTCTGGCATGATCATTGGCACCAGGATTCCATCCTCTCTGAGAAATATCCGGCTCTATCCATTAGC
CACACAAAAAAACATATTCTTACAGGAATCTTGGGATGATCAACATGGATGGAGCCTCATCTTTAGGAGAAATTTCAAAGATGAGGAATACGGGGATTGGATTAGCCTTA
TGGATAGTTTAAATGTGATTCATCTTACAGAAAGCAGGGACCAGTGGGTTGTTAGGTTATGCCGGGATCATGGATTGTATAGTGCATTGGTTTATCTTTTCAACAAAGGA
TTAGATGATTTCAGAACACCTTTAGAGGAGCTGTTGGCAGTGCTACGAACCAGTAAGAGCAAACGTGCTTCTGCCCTTGGGTATAAGACACTAGTTTATTTGAAGTATTG
CTTTTCAGGACTTGCTTTTCCACCAGGTATTACTGAAGTTGTTGTAGGTTTAGTATTTCATGTACCCCAATACACCCCAAAATTACCAATGTTTTATGCAGTCATTTCTG
TATAA

mRNA sequence

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Protein sequence

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MIGSHKSLVMEQILLSGMIIGTRIPSSLRNIRLYPLATQKNIFLQESWDDQHGWSLIFRRNFKDEEYGDWISLMDSLNVIHLTESRDQWVVRLCRDHGLYSALVYLFNKG
LDDFRTPLEELLAVLRTSKSKRASALGYKTLVYLKYCFSGLAFPPGITEVVVGLVFHVPQYTPKLPMFYAVISV

Lsi05G022130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome