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Lsi05G022270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G022270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S13
Genome locationchr05:28833746..28836760
RNA-Seq ExpressionLsi05G022270
SyntenyLsi05G022270
Gene Ontology termsGO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACN09872.1 40S ribosomal protein S13 [Salmo salar]1.2e-0744Show/hide
Query:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        +IL  +R Q++GL++ QD VSS+ + LGN +R+ K+HT+LR  + LL KL D++F++ R +L+P      VG+CR
Subjt:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
KAE8660186.1 Glucose-6-phosphate 1-dehydrogenase 4 [Hibiscus syriacus]5.1e-1457.33Show/hide
Query:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        +IL N R +++GLK+TQD VSSN  +L N +RITKN TNLR GQALLC+LA++  +I R DL+PTW +P    CR
Subjt:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
KAF0732681.1 hypothetical protein Ae201684_010387 [Aphanomyces euteiches]7.1e-0857.14Show/hide
Query:  LKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        L++TQD  +S+  DLGN VR+T++ TNL RGQ LL +LA +IFNI RRDLKP  R  LV   R
Subjt:  LKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
TrEMBL top hitse value%identityAlignment
A0A1Z5LHG4 40S ribosomal protein S13 (Fragment)1.2e-0540Show/hide
Query:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        ++L  LRCQ++GL+++QD V+ + + L N +RI KN T+LRR QA L +L ++   + R  L+P      V Q R
Subjt:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
A0A6A2XDI8 Glucose-6-phosphate 1-dehydrogenase 42.5e-1457.33Show/hide
Query:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        +IL N R +++GLK+TQD VSSN  +L N +RITKN TNLR GQALLC+LA++  +I R DL+PTW +P    CR
Subjt:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
A0A6G0WYT8 Uncharacterized protein3.5e-0857.14Show/hide
Query:  LKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        L++TQD  +S+  DLGN VR+T++ TNL RGQ LL +LA +IFNI RRDLKP  R  LV   R
Subjt:  LKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
A0A7S3UFW9 Hypothetical protein6.1e-0537.33Show/hide
Query:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        ++L +L  +++ L++ +D V+S+  DLG+ V I ++H +L  G+AL  +LAD++ ++  R L P+   PLVGQ R
Subjt:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
C0H753 40S ribosomal protein S135.9e-0844Show/hide
Query:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
        +IL  +R Q++GL++ QD VSS+ + LGN +R+ K+HT+LR  + LL KL D++F++ R +L+P      VG+CR
Subjt:  KILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRITKNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCACTGTTTTCCTTATTCCGAATCAGAAGAAAACTTAAGAAACCCCGCCAAGAAATCACCGCTTGAATCAATCTTGACGCTAATCATCCTATTATCAACTTCAGC
TTCAATCAGTGAACTAACAACCACAAGACTAGAGCTACTTACTTCATCCGGTGGCAGGCGGAACAACTGCCGATATTCTTCACTTCTCAATAATATTGGCACAACGATGT
TTTGGTCTAAGATCCTCTGGAATCTCCGGTGCCAATCCATGGGCCTTAAGAATACGCAAGATTTTGTTTCCAGTAACACTTCTGACCTGGGCAATCCTGTGAGAATCACG
AAGAATCACACCAATTTGAGAAGGGGTCAAGCCCTTCTTTGCAAACTTGCAGATATTATCTTCAACATCCGTAGAAGAGATCTTAAGCCAACTTGGCGGCGTCCTCTTGT
AGGGCAATGCAGAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCACTGTTTTCCTTATTCCGAATCAGAAGAAAACTTAAGAAACCCCGCCAAGAAATCACCGCTTGAATCAATCTTGACGCTAATCATCCTATTATCAACTTCAGC
TTCAATCAGTGAACTAACAACCACAAGACTAGAGCTACTTACTTCATCCGGTGGCAGGCGGAACAACTGCCGATATTCTTCACTTCTCAATAATATTGGCACAACGATGT
TTTGGTCTAAGATCCTCTGGAATCTCCGGTGCCAATCCATGGGCCTTAAGAATACGCAAGATTTTGTTTCCAGTAACACTTCTGACCTGGGCAATCCTGTGAGAATCACG
AAGAATCACACCAATTTGAGAAGGGGTCAAGCCCTTCTTTGCAAACTTGCAGATATTATCTTCAACATCCGTAGAAGAGATCTTAAGCCAACTTGGCGGCGTCCTCTTGT
AGGGCAATGCAGAGGCTGA
Protein sequenceShow/hide protein sequence
MHHCFPYSESEENLRNPAKKSPLESILTLIILLSTSASISELTTTRLELLTSSGGRRNNCRYSSLLNNIGTTMFWSKILWNLRCQSMGLKNTQDFVSSNTSDLGNPVRIT
KNHTNLRRGQALLCKLADIIFNIRRRDLKPTWRRPLVGQCRG