CuGenDBv2

Gene ID	Lsi06G000320
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger CCCH domain-containing protein 3
Genome location	chr06:342445..344174
RNA-Seq Expression	Lsi06G000320
Synteny	Lsi06G000320
Gene Ontology terms	GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger IPR013085 - U1-C, C2H2-type zinc finger IPR036236 - Zinc finger C2H2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588586.1 Zinc finger CCCH domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-20

70.67

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTIGDN
        MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSF  ++     QP S +F    R+CN F+TT GD+
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTIGDN

XP_004135569.1 zinc finger CCCH domain-containing protein 3 [Cucumis sativus]

4.1e-22

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   +     Q F  SFH RPRICN F++T
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

XP_008450521.1 PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]

1.8e-22

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     Q F  SFH RPRICN F++T
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

XP_022989487.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima]

1.0e-20

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     QPFSD+F    R+CN F+TT
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

XP_038879279.1 zinc finger CCCH domain-containing protein 3 [Benincasa hispida]

4.2e-19

73.24

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF      +  QP   +F  RP  CN F+TT
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1B0 C3H1-type domain-containing protein

2.0e-22

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF   +     Q F  SFH RPRICN F++T
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

A0A1S3BQ25 zinc finger CCCH domain-containing protein 3

8.8e-23

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     Q F  SFH RPRICN F++T
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

A0A5D3CFN3 Zinc finger CCCH domain-containing protein 3

8.8e-23

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     Q F  SFH RPRICN F++T
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

A0A6J1EU59 zinc finger CCCH domain-containing protein 3

7.7e-19

71.83

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSF  ++     QP S +F    R+CN F+TT
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

A0A6J1JFY8 zinc finger CCCH domain-containing protein 3 isoform X1

4.8e-21

76.06

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF  ++     QPFSD+F    R+CN F+TT
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

SwissProt top hits

e value

%identity

Alignment

Q0JP11 Zinc finger CCCH domain-containing protein 3

2.7e-13

75.61

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS
        MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDS

Q2TA39 Zinc finger matrin-type protein 5

6.5e-07

41.79

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Query:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        +Y+CDYC++ FQD    RK+HL  L H KAK LW+D F  A++        D  + RP  C  F+ T
Subjt:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

Q6AXL8 Zinc finger matrin-type protein 5

6.5e-07

35.82

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Query:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        +YYCDYC++ FQD    RK+HL  + H +AK  WFD+F  A++    +   +       +C  F+ T
Subjt:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

Q9CQR5 Zinc finger matrin-type protein 5

1.5e-06

40.3

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Query:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F  A++        D  + RP  C  F+ T
Subjt:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

Q9UDW3 Zinc finger matrin-type protein 5

1.5e-06

40.3

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Query:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        +Y+CDYC++ FQD    RK+HL  L H KAK +W+D F  A++        D  + RP  C  F+ T
Subjt:  KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

Arabidopsis top hits

e value

%identity

Alignment

AT5G26749.1 C2H2 and C2HC zinc fingers superfamily protein

3.0e-15

57.75

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT
        MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+    S+SSS+   P   +F  +  +CN FIT+
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITT

AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein

1.8e-15

56.94

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Query:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTI
        MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+    S+SSS+   P   +F  +  +CN FIT++
Subjt:  MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTI

Sequences

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CDS sequence

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ATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCT
GTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAACAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGATTGGGG
ATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGACTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACA
AATGTGCTTTTCCTTGTTTTCCTTCCAGTTGATGAAGATATCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGC
ACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

mRNA sequence

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GGTAGCAAAAGATTGCAGGAGAAATTGATTAGAAAGAGAGAAGCTTTAGGAAGGAATCGAAGAATCGAAGATGCCACTGGGAAAATATTACTGCGATTACTGCGAGAAGC
AATTCCAAGACACTCCTTTCGCTCGTAAACGCCATCTTCAAAGCCTTTCCCATCAGAAGGCCAAAGCTCTGTGGTTCGACTCCTTCAGTTCAGCTTCTTCTTCCAATCAA
CAACAACCTTTCTCTGATTCCTTCCACCTCCGACCACGCATCTGTAATCCATTCATCACTACGATTGGGGATAATCCACCAATATCAGTTATTGCTACAACTCTCCTCGA
CTCTCTTGTTTCAGTCCTACTCTACTTATGGAGCAATTTGTACAAATTTGGTGTCTTCCACAGCCAGACAAATGTGCTTTTCCTTGTTTTCCTTCCAGTTGATGAAGATA
TCAAGCAAACACCTGATTCTAAGACCATTTTGTTCACTAGCAAACTTTACTTTTCATTCATAAACCAGGCACGGGAGGCTTCAAATGTTATTGATCTCGACAAGTAG

Protein sequence

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MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFSSASSSNQQQPFSDSFHLRPRICNPFITTIGDNPPISVIATTLLDSLVSVLLYLWSNLYKFGVFHSQT
NVLFLVFLPVDEDIKQTPDSKTILFTSKLYFSFINQAREASNVIDLDK

Lsi06G000320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome