CuGenDBv2

Gene ID	Lsi06G000340
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I iron-sulfur center
Genome location	chr06:349375..351774
RNA-Seq Expression	Lsi06G000340
Synteny	Lsi06G000340
Gene Ontology terms	GO:0009733 - response to auxin (biological process) GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR017491 - Photosystem I protein PsaC IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 - 4Fe-4S ferredoxin, iron-sulphur binding, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

KAD4385883.1 hypothetical protein E3N88_26052 [Mikania micrantha]

2.8e-50

86.07

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Query:  YVMVWDYLDYKIKPDSRARFNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACP
        YVMV DYLDYK KPD RAR +NRQLKG IFSIFVIAIAAAEAAIG AIVSSIY        CPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACP
Subjt:  YVMVWDYLDYKIKPDSRARFNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACP

Query:  TDFLSVRVYLWHETTRSMGLAY
        TDFLSVRVYLWHETTRSMG+AY
Subjt:  TDFLSVRVYLWHETTRSMGLAY

KAF1876812.1 hypothetical protein Lal_00035374 [Lupinus albus]

3.9e-44

89.52

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSI------YRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
        F++RQLKGNIFSIFVIAIAAAEAAIG AIVSSI       RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSI------YRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE

Query:  TTRSM
        TTRSM
Subjt:  TTRSM

KAF8376867.1 hypothetical protein HHK36_031470 [Tetracentron sinense]

1.6e-45

81.67

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Query:  RQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYR--------------------CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTD
        RQLKG+IFSIFVIAIAAAEAAIGPAIVSSIYR                    CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTD
Subjt:  RQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYR--------------------CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTD

Query:  FLSVRVYLWHETTRSMGLAY
        FLSVRVYLWHETTRSMGLAY
Subjt:  FLSVRVYLWHETTRSMGLAY

RDY13713.1 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic, partial [Mucuna pruriens]

3.4e-48

95.05

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMG
        F++RQLKGNIFSIFVIA+AAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSM 
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMG

Query:  L
        L
Subjt:  L

RYR58339.1 hypothetical protein Ahy_A05g024027 [Arachis hypogaea]

2.7e-45

86.24

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIY------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
        F++ QLKGNIFSIFVIAIAAAEAAIGPAIVSSIY      RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSV+VYLWHE
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIY------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE

Query:  TTRSMGLAY
        TTRSM   +
Subjt:  TTRSMGLAY

TrEMBL top hits

e value

%identity

Alignment

A0A371IFF5 9 kDa polypeptide (Fragment)

1.6e-48

95.05

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMG
        F++RQLKGNIFSIFVIA+AAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSM 
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMG

Query:  L
        L
Subjt:  L

A0A445D565 9 kDa polypeptide

1.3e-45

86.24

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIY------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
        F++ QLKGNIFSIFVIAIAAAEAAIGPAIVSSIY      RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSV+VYLWHE
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIY------RCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE

Query:  TTRSMGLAY
        TTRSM   +
Subjt:  TTRSMGLAY

A0A5N6N883 9 kDa polypeptide

1.3e-50

86.07

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Query:  YVMVWDYLDYKIKPDSRARFNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACP
        YVMV DYLDYK KPD RAR +NRQLKG IFSIFVIAIAAAEAAIG AIVSSIY        CPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACP
Subjt:  YVMVWDYLDYKIKPDSRARFNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACP

Query:  TDFLSVRVYLWHETTRSMGLAY
        TDFLSVRVYLWHETTRSMG+AY
Subjt:  TDFLSVRVYLWHETTRSMGLAY

A0A6A5N0E4 9 kDa polypeptide

1.9e-44

89.52

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSI------YRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
        F++RQLKGNIFSIFVIAIAAAEAAIG AIVSSI       RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSI------YRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE

Query:  TTRSM
        TTRSM
Subjt:  TTRSM

A0A6A5N1E2 9 kDa polypeptide

1.9e-44

89.52

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSI------YRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
        F++RQLKGNIFSIFVIAIAAAEAAIG AIVSSI       RCTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSI------YRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHE

Query:  TTRSM
        TTRSM
Subjt:  TTRSM

SwissProt top hits

e value

%identity

Alignment

A4GGE7 Photosystem I iron-sulfur center

1.8e-36

100

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Query:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A4QJG7 Photosystem I iron-sulfur center

1.2e-35

98.53

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Query:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

A4QJQ1 Photosystem I iron-sulfur center

1.2e-35

98.53

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Query:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

P10793 Photosystem I iron-sulfur center

1.8e-36

100

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Query:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

P42046 Photosystem I iron-sulfur center

1.8e-36

100

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Query:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

Arabidopsis top hits

e value

%identity

Alignment

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding

8.3e-37

98.53

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Query:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
        CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Subjt:  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

ATCG01070.1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

2.1e-08

75.61

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Query:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVR
        F+N QLKG IF IFVIAIAAAEAAIG AIVSSIYR  + +R
Subjt:  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVR

Sequences

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CDS sequence

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ATGATATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCAAGATTTAATAATCGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATTGGCCCAGCTATTGTTTCGTCAATTTATCGGTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTT
GGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACAGAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGTTCGCGTT
TATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA

mRNA sequence

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Protein sequence

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MIYVMVWDYLDYKIKPDSRARFNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV
YLWHETTRSMGLAY

Lsi06G000340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome