; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G000390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G000390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S18, chloroplastic
Genome locationchr06:361401..363518
RNA-Seq ExpressionLsi06G000390
SyntenyLsi06G000390
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001648 - Ribosomal protein S18
IPR018275 - Ribosomal protein S18, conserved site
IPR036870 - Ribosomal protein S18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QHB75985.1 ribosomal protein S18 [Cucumis melo subsp. melo]7.9e-4097.92Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRL+LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
QJR52978.1 ribosomal protein S18 [Herpetospermum pedunculosum]4.6e-4097.92Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR+NRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
YP_009317408.1 ribosomal protein S18 [Coccinia grandis]7.9e-4097.92Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFR+RLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
YP_009456168.1 ribosomal protein S18 [Lagenaria siceraria]3.5e-4098.96Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
YP_009752349.1 ribosomal protein S18 [Bryonia marmorata]7.9e-4097.92Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTART+ L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
TrEMBL top hitse value%identityAlignment
A0A514YKX7 30S ribosomal protein S18, chloroplastic1.7e-4098.96Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
A0A6H0ENZ8 30S ribosomal protein S18, chloroplastic1.7e-4098.96Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
A0A6H0ES38 30S ribosomal protein S18, chloroplastic1.7e-4098.96Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
A0A6H0EW23 30S ribosomal protein S18, chloroplastic1.7e-4098.96Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
X2F1R4 30S ribosomal protein S18, chloroplastic1.7e-4098.96Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
SwissProt top hitse value%identityAlignment
A0ZZ57 30S ribosomal protein S18, chloroplastic2.0e-4195.83Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSEST RT  L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
Q09WZ5 30S ribosomal protein S18, chloroplastic7.4e-4194.79Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIL LLPFLNNEKQFERSEST RT  L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
Q0G9U0 30S ribosomal protein S18, chloroplastic2.2e-4093.75Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFER+EST RT  L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
Q2L928 30S ribosomal protein S18, chloroplastic9.7e-4194.79Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILS LPFLNNEKQFERSEST RT  L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
Q68RY4 30S ribosomal protein S18, chloroplastic1.7e-4093.75Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        MDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNN+KQFER+ESTART  L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
Arabidopsis top hitse value%identityAlignment
ATCG00650.1 ribosomal protein S187.6e-4191.67Show/hide
Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL
        M+KSKRL  KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQRLITIAIKQARILSLLPFLNN+KQFERSEST RT  L
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAG
TCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTT
TGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGATTTGATTGTCGTGTCCGATTTGGGCAAGTATTTTACGATTAAGAAG
CAACTGCCTCTTGTACAGATTGTTAATAGTTCGATTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACGTATTTTTCCAATGTATAAAATAAAAATTCCAATGGC
TTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGATTAATAGTAATCGAAAATATTATATTAA
CCCCCGGTAAAAAGATAAAATCTCAAATTTCAGATTTTTGCGTGAAATCCCTGCGATTTTTTATTCAACCGCTACAAGATCAACAATTCCATGAGCTTGGGCTTCTGTTG
CTGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAG
TCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTT
TGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGATTTGATTGTCGTGTCCGATTTGGGCAAGTATTTTACGATTAAGAAG
CAACTGCCTCTTGTACAGATTGTTAATAGTTCGATTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACGTATTTTTCCAATGTATAAAATAAAAATTCCAATGGC
TTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGATTAATAGTAATCGAAAATATTATATTAA
CCCCCGGTAAAAAGATAAAATCTCAAATTTCAGATTTTTGCGTGAAATCCCTGCGATTTTTTATTCAACCGCTACAAGATCAACAATTCCATGAGCTTGGGCTTCTGTTG
CTGACATAA
Protein sequenceShow/hide protein sequence
MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDLIVVSDLGKYFTIKK
QLPLVQIVNSSIIPFSLPSLLITKRIFPMYKIKIPMAFATITFPTTISFFVLVTPKYEIVFILGLIVIENIILTPGKKIKSQISDFCVKSLRFFIQPLQDQQFHELGLLL
LT