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Lsi06G000400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G000400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationchr06:363460..363724
RNA-Seq ExpressionLsi06G000400
SyntenyLsi06G000400
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsIPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA
IPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QJD26320.1 ClpP [Trichosanthes kirilowii]1.3e-31100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

YP_009236304.1 clp protease proteolytic subunit [Gynostemma pentaphyllum]1.3e-31100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

YP_009439916.1 ATP-dependent Clp protease proteolytic subunit [Gynostemma caulopterum]1.3e-31100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

YP_009456086.1 ATP-dependent Clp protease proteolytic subunit [Momordica charantia]1.3e-31100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

YP_009870732.1 clp protease proteolytic subunit [Medinilla magnifica]1.3e-31100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

TrEMBL top hitse value%identityAlignment
A0A120L1B9 ATP-dependent Clp protease proteolytic subunit6.5e-32100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A0A410HFB2 ATP-dependent Clp protease proteolytic subunit6.5e-32100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A0A4P9HQ12 ATP-dependent Clp protease proteolytic subunit6.5e-32100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A0A6H0ERC6 ATP-dependent Clp protease proteolytic subunit6.5e-32100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A0A6M3RTL1 ATP-dependent Clp protease proteolytic subunit6.5e-32100Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

SwissProt top hitse value%identityAlignment
A4QJE0 ATP-dependent Clp protease proteolytic subunit6.7e-3497.3Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSATEAQAHGIVDLVAV+
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A4QJM4 ATP-dependent Clp protease proteolytic subunit6.7e-3497.3Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSATEAQAHGIVDLVAV+
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A4QKD0 ATP-dependent Clp protease proteolytic subunit6.7e-3497.3Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSATEAQAHGIVDLVAV+
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

A4QKL7 ATP-dependent Clp protease proteolytic subunit6.7e-3497.3Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSATEAQAHGIVDLVAV+
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

Q49KX3 ATP-dependent Clp protease proteolytic subunit2.3e-3498.65Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVA+E
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

Arabidopsis top hitse value%identityAlignment
AT1G02560.1 nuclear encoded CLP protease 53.6e-0634.78Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVD
        +MIHQP       QT +  ++A E+L  +  +       TG+ L  +++D +RD FMSA EA+ +G++D
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVD

AT1G11750.1 CLP protease proteolytic subunit 61.4e-0537.68Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVD
        VMIHQP +        +   +  E ++ R+ I R+Y   TG+PL  V +  ERD F+SA+EA   G++D
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVD

AT1G11750.2 CLP protease proteolytic subunit 61.4e-0537.68Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVD
        VMIHQP +        +   +  E ++ R+ I R+Y   TG+PL  V +  ERD F+SA+EA   G++D
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVD

AT5G23140.1 nuclear-encoded CLP protease P79.1e-1040.54Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQP S  Y  Q  +  +  ++++++ + +  +YV+ TG+PL VV+ +M+RD FM+  EA+A GI+D V  E
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

ATCG00670.1 plastid-encoded CLP P6.2e-3595.95Show/hide
Query:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE
        VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WV+SEDMERDVFMSATEAQAHGIVDLVAV+
Subjt:  VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAAACGGGAGAATTTATCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGT
TTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAG
CGGTTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAAACGGGAGAATTTATCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGT
TTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAG
CGGTTGAATAA
Protein sequenceShow/hide protein sequence
MMVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE