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Lsi06G000470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G000470
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCytochrome b6/f complex subunit IV
Genome locationchr06:370322..371436
RNA-Seq ExpressionLsi06G000470
SyntenyLsi06G000470
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD46071.1 TPA_asm: hypothetical protein HUJ06_004301 [Nelumbo nucifera]1.9e-2194.74Show/hide
Query:  APIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT
        APIPNQRATA+PIKKTVVATGRRNGFWNLLTFSK GTVNNPAGTETIKRTPNNL GT
Subjt:  APIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT

KAD7117051.1 hypothetical protein E3N88_04319 [Mikania micrantha]2.5e-2190Show/hide
Query:  GNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT
        GNVAPIPNQRATAVPIK TVVATGRRNGFWNLLTFSK GTVNNPAGT+TI R PNNL GT
Subjt:  GNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT

KAG0447209.1 hypothetical protein HPP92_028442 [Vanilla planifolia]1.7e-2291.8Show/hide
Query:  IGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT
        +GNVAPIPNQRAT VPIKKTVVATGRRNGFWNLLTFSK GTVNNP GTETIKRTPNNL GT
Subjt:  IGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT

KAG5568931.1 hypothetical protein H5410_064054 [Solanum commersonii]1.1e-2475.28Show/hide
Query:  IPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGTKYHSGNISKGVANGSAGSPIIDGSRTAKPTLHAI
        +PNQRATAVPIKKTVVATGRRNG  NLLTFSK GTVNNP              G KYHSG ISKGVANGSAGSPIIDGS+ AKPTLHAI
Subjt:  IPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGTKYHSGNISKGVANGSAGSPIIDGSRTAKPTLHAI

YP_009497688.1 cytochrome b6/f complex subunit IV [Acanthoceras zachariasii]1.9e-2159.46Show/hide
Query:  KPKVRDLSIGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLF---------GTKYHSGNISKGVANGSAGSPIID
        KPK   LSIG  APIPNQ A   P  KT +A GRRNGFWNL TFS  GTV NP GT  I  TPNNLF         G KYHSG IS GV NGSAGSP   
Subjt:  KPKVRDLSIGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLF---------GTKYHSGNISKGVANGSAGSPIID

Query:  GSRTAKPTLHA
        G  T KP   A
Subjt:  GSRTAKPTLHA

TrEMBL top hitse value%identityAlignment
A0A2G3B125 50S ribosomal protein L16, chloroplastic9.9e-0888.89Show/hide
Query:  GTKYHSGNISKGVANGSAGSPIIDGSRTAKPTLHAI
        G KYH G ISKGVANGSAGSPIIDGS+TAKPTLHAI
Subjt:  GTKYHSGNISKGVANGSAGSPIIDGSRTAKPTLHAI

A0A2U9NTE3 Cytochrome b6/f complex subunit IV9.2e-2259.46Show/hide
Query:  KPKVRDLSIGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLF---------GTKYHSGNISKGVANGSAGSPIID
        KPK   LSIG  APIPNQ A   P  KT +A GRRNGFWNL TFS  GTV NP GT  I  TPNNLF         G KYHSG IS GV NGSAGSP   
Subjt:  KPKVRDLSIGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLF---------GTKYHSGNISKGVANGSAGSPIID

Query:  GSRTAKPTLHA
        G  T KP   A
Subjt:  GSRTAKPTLHA

A0A5N6L4W8 Uncharacterized protein2.5e-1194.87Show/hide
Query:  GNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNG
        GNVAPIPNQRA AVPIKKTVVATGRRNGFWNLLTFSK G
Subjt:  GNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNG

A0A5N6PW93 Ribosomal_L2_C domain-containing protein1.2e-2190Show/hide
Query:  GNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT
        GNVAPIPNQRATAVPIK TVVATGRRNGFWNLLTFSK GTVNNPAGT+TI R PNNL GT
Subjt:  GNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGT

K2R3U1 Uncharacterized protein (Fragment)3.1e-0989.47Show/hide
Query:  KKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTP
        K  VVATGRRNGFWNLLTFSK GTVNNP GTETIKRTP
Subjt:  KKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAA
TGGATTTTGGAATTTATTGACATTCTCCAAAAACGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTAAATACCATT
CCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAAGTTACAATTATCCATTG
CAAGGAATTCAGTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAGC
CCCCAAAAATATGGATACTTTTTACATCCAAAGGATTTACTTGTTACTAATAGAGTCTAGCCTATGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATCATAAATC
GAGTCAATGCAGAGGAAATGAATGCATTTTCATACTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAA
TGGATTTTGGAATTTATTGACATTCTCCAAAAACGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTAAATACCATT
CCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAAGTTACAATTATCCATTG
CAAGGAATTCAGTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAGC
CCCCAAAAATATGGATACTTTTTACATCCAAAGGATTTACTTGTTACTAATAGAGTCTAGCCTATGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATCATAAATC
GAGTCAATGCAGAGGAAATGAATGCATTTTCATACTATTAA
Protein sequenceShow/hide protein sequence
MKPKVRDLSIGNVAPIPNQRATAVPIKKTVVATGRRNGFWNLLTFSKNGTVNNPAGTETIKRTPNNLFGTKYHSGNISKGVANGSAGSPIIDGSRTAKPTLHAISYNYPL
QGIQFLQINAQYPSRLTKLIMFKCFLGRLRPCDGALAPKNMDTFYIQRIYLLLIESSLCSSLDPLFHSDSIINRVNAEEMNAFSYY