CuGenDBv2

Gene ID	Lsi06G000720
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein S27a / Ubiquitin family protein
Genome location	chr06:636548..640045
RNA-Seq Expression	Lsi06G000720
Synteny	Lsi06G000720
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0019941 - modification-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0031386 - protein tag (molecular function) GO:0031625 - ubiquitin protein ligase binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR029071 - Ubiquitin-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG2403943.1 Polyubiquitin Ubiquitin Precursor [Vigna angularis]

1.6e-07

47.3

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKTVLGEAP-KLMEEGFIFFILRVATSLVSEEEGCSDDFD
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT   + P + +      F+  +    ++ E   SD  D
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKTVLGEAP-KLMEEGFIFFILRVATSLVSEEEGCSDDFD

VFQ73225.1 unnamed protein product [Cuscuta campestris]

5.0e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

XP_012834695.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Erythranthe guttata]

5.0e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

XP_022896501.1 ubiquitin-40S ribosomal protein S27a-like [Olea europaea var. sylvestris]

1.7e-06

81.08

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+LVDYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

XP_031474419.1 ubiquitin-40S ribosomal protein S27a-like [Nymphaea colorata]

5.0e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

TrEMBL top hits

e value

%identity

Alignment

A0A0L0W1P6 Ubiquitin-40S ribosomal protein S27a-2

2.4e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

A0A238FQ69 BQ2448_7948 protein

2.4e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

A0A2N5W4W8 Ubiquitin-like domain-containing protein

2.4e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

B6K1Z1 Ribomal-ubiquitin fusion protein Ubi5

2.4e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

U5H7T8 Ubiquitin-40S ribosomal protein S27a-1

2.4e-06

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

SwissProt top hits

e value

%identity

Alignment

P51431 Ubiquitin-40S ribosomal protein S27a-2

6.5e-09

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

P59232 Ubiquitin-40S ribosomal protein S27a-2

6.5e-09

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

P59233 Ubiquitin-40S ribosomal protein S27a-3

6.5e-09

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

P59271 Ubiquitin-40S ribosomal protein S27a-1

6.5e-09

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

Q9ARZ9 Ubiquitin-40S ribosomal protein S27a-1

6.5e-09

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

Arabidopsis top hits

e value

%identity

Alignment

AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein

4.7e-10

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

AT1G55060.1 ubiquitin 12

1.4e-06

73.33

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGA
        K+ EDGR+L DYNIQKES  HLV RLRGG+
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGA

AT2G47110.1 ubiquitin 6

4.7e-10

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

AT2G47110.2 ubiquitin 6

4.7e-10

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

AT3G62250.1 ubiquitin 5

4.7e-10

78.38

Show/hide

Query:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT
        K+ EDGR+L DYNIQKES  HLV RLRGGAKKRK+KT
Subjt:  KKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAAAAATTCACCTTGTGAACATATCTGAAAAAGTTAAAAAGGAAGAGGACGGTCGAAGCCTTGTCGACTACAACATCCAGAAGGAATCCATGTTCCACCTTGTTTT
CCGTCTAAGAGGAGGCGCCAAGAAGCGTAAGAGGAAGACCGTCTTAGGAGAGGCGCCAAAGCTGATGGAAGAGGGTTTCATTTTTTTTATTTTGAGGGTCGCAACATCGC
TGGTTTCAGAGGAGGAGGGTTGTAGCGATGACTTTGATTTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKKIHLVNISEKVKKEEDGRSLVDYNIQKESMFHLVFRLRGGAKKRKRKTVLGEAPKLMEEGFIFFILRVATSLVSEEEGCSDDFDF

Lsi06G000720 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome