; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G000760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G000760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExonuclease domain-containing protein
Genome locationchr06:694439..695662
RNA-Seq ExpressionLsi06G000760
SyntenyLsi06G000760
Gene Ontology termsGO:0000738 - DNA catabolic process, exonucleolytic (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008296 - 3'-5'-exodeoxyribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR040393 - Three-prime repair exonuclease 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590475.1 Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]7.6e-17292.17Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT PMCFSILRVPKFGVPTLANLWRENFHPL RNYGHSSWYDQLGFRIYNLEGGQ+KRWTRKSM+TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEK+ TQKLQ C+IQ+TI+K+KELA PVTVI FDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+VVHGIT+RMVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDN+LLARQLMKS+DSKITKI+LQALREYYN+PLVGSAHRAMSDVR+LSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN
        ILQRLTFDLKLGIPDLIERSFT  DLINKKKN
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN

XP_022961373.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata]2.9e-17191.87Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT PMCFSILRVPKFGVPTLANLWRENFHPL RNYGHSSWYDQLGFR YNLEGGQ+KRWTRKSM+TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEK+ TQKLQ C+IQ+TI+K+KELA PVTVI FDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+VVHGIT+RMVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDN+LLARQLMKS+DSKITKI+LQALREYYN+PLVGSAHRAMSDVR+LSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN
        ILQRLTFDLKLGIPDLIERSFT  DLINKKKN
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN

XP_022968752.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima]3.2e-17092.15Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT  MCFSILRVPKFGVPTLANLWRENFHPL RNYGHSSWYDQLGFRIYNLEGGQ+KRWTRKSMTTKAGRKAK NPSSKP+NIRNEILEESVSTSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEK  TQKLQ C+IQ+TIIK+KELA PVTVI FDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+VVHGIT+RMVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRCSVDIPLNWLFFDN+LLARQLMKS+DSKITKI+LQALREYYN+PLVGSAHRAMSDVR+LSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKK
        ILQRLTFDLKLGIPDLIERSFT  DLINKKK
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKK

XP_023515555.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]3.8e-17191.87Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT PMCFSILRVPKFGVPTLANLWRENFHPL RNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSM+TKAGRKAK +PSSKP+NIRNEILEESVSTSCT+S
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEK+ TQKLQ C+IQ+TI K+KELA PVTVI FDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+VVHGIT+RMVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDN+LLARQLMKS+DSKI KI+LQALREYYN+PLVGSAHRAMSDVR+LSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN
        ILQRLTFDLKLGIPDLIERSFT  DLINKKKN
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN

XP_038878496.1 exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida]1.6e-16691.02Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MI  PMCFSILR PKFGVPTLANLWRENFHPL RN  HSSW+DQLGFRIYNLEGGQNKRW RKSMTTKAGRKAKANPSSKPTNIRNEILEES+STSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEKSETQKLQYCDIQQ IIKNKELA PVTVI FDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITN MVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSR--QKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSL
        IPILLQF++SR  QKPDGYVLLVAHNARTFDVPFLLKEFSRCS DIP NW FFD++ LARQLMKSSDSKITKI+LQALREYY++ LVGSAHRAMSDVRSL
Subjt:  IPILLQFIKSR--QKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSL

Query:  SLILQRLTFDLKLGIPDLIERSFTALDLINKKKN
        SLILQRLTF+LKLGI DLIERSFTA DLINKKKN
Subjt:  SLILQRLTFDLKLGIPDLIERSFTALDLINKKKN

TrEMBL top hitse value%identityAlignment
A0A0A0LVY3 Exonuclease domain-containing protein9.8e-14982.52Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI R PK+GVP LANLWRENFHPL RN+GH+ WYDQL FRIYNLEGG+NKRWTRKS+TTKAG KAK NPSSKPTNIRNEIL+ES+  SCTV+INKSE
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILL
        KSETQKLQYCDIQ TIIK+KE A  VTVI FDIETTGFSRNLDRIVEIA QDLSGGENSTFQTLINP+CYI NS +HGI+NRMV  P VPRM+ELIPI+L
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILL

Query:  QFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRL
        QF+KSRQKP GYVLLVAHNARTFDVPFLL EFSR SVDIPLNWLFFD M LARQLMK SDSKITKITLQAL EYY + L G AHRA+SDVR LS ILQRL
Subjt:  QFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRL

Query:  TFDLKLGIPDLIERSFTALDLINKKK
        TFDLKL I DL+ER+FT LDLINKKK
Subjt:  TFDLKLGIPDLIERSFTALDLINKKK

A0A0N9LRH7 Exonuclease DPD12.2e-14882.52Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI R PK+GVP LANLWRENFHPL RN+GH+ WYDQL FRIYNLEGG+NKRWTRKS+TTKAG KAK NPSSKPTNIRNEIL+ESV  SCTV+INKSE
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILL
        KSETQKLQYCDIQ TIIK+KE A  VTVI FDIETTGFSRNLDRIVEIA QDLSGGENSTFQTLINP+CYI NS +HGI+NRMV  P VP M+ELIPI+L
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILL

Query:  QFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRL
        QF+KSRQKP GYVLLVAHNARTFDVPFLL EFSR SVDIPLNWLFFD M LARQLMK SDSKITKITLQAL EYY + L G AHRA+SDVR LS ILQRL
Subjt:  QFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRL

Query:  TFDLKLGIPDLIERSFTALDLINKKK
        TFDLKL I DL+ER+FT LDLINKKK
Subjt:  TFDLKLGIPDLIERSFTALDLINKKK

A0A6J1C1V8 exonuclease DPD1, chloroplastic/mitochondrial6.1e-15986.14Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT PMCFSILRVPKFGV TLAN WR NFHPL RNYGHSSWYDQL FRIYNLEGGQNKRWTRKS+TTKAGRK K NPSSKP++IRNEILE SVSTSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INK+EKSETQKLQYCDIQQT  K KEL  PVTVI FDIETTGFSR  DRIVEIA QDLSGGENSTFQTLINPECYIPNS+VHGIT+RMVSRPDVPRMK+L
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRCS DIP +WLF DNM+LARQLM SSDSK++KI+LQALREYY++PLVGSAHRAMSDV SLSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN
        ILQRLTFDLKL IPDLIERSFTA DLI K K+
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN

A0A6J1HDU6 exonuclease DPD1, chloroplastic/mitochondrial1.4e-17191.87Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT PMCFSILRVPKFGVPTLANLWRENFHPL RNYGHSSWYDQLGFR YNLEGGQ+KRWTRKSM+TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEK+ TQKLQ C+IQ+TI+K+KELA PVTVI FDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+VVHGIT+RMVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDN+LLARQLMKS+DSKITKI+LQALREYYN+PLVGSAHRAMSDVR+LSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN
        ILQRLTFDLKLGIPDLIERSFT  DLINKKKN
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKKN

A0A6J1HUD7 exonuclease DPD1, chloroplastic/mitochondrial1.6e-17092.15Show/hide
Query:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS
        MIT  MCFSILRVPKFGVPTLANLWRENFHPL RNYGHSSWYDQLGFRIYNLEGGQ+KRWTRKSMTTKAGRKAK NPSSKP+NIRNEILEESVSTSCTVS
Subjt:  MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVS

Query:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL
        INKSEK  TQKLQ C+IQ+TIIK+KELA PVTVI FDIETTGFSR LDRIVEIALQDLSGGENSTFQTLINPECYIPN+VVHGIT+RMVSRPDVPRMKEL
Subjt:  INKSEKSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKEL

Query:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL
        IPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRCSVDIPLNWLFFDN+LLARQLMKS+DSKITKI+LQALREYYN+PLVGSAHRAMSDVR+LSL
Subjt:  IPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSL

Query:  ILQRLTFDLKLGIPDLIERSFTALDLINKKK
        ILQRLTFDLKLGIPDLIERSFT  DLINKKK
Subjt:  ILQRLTFDLKLGIPDLIERSFTALDLINKKK

SwissProt top hitse value%identityAlignment
Q5HPS7 DNA polymerase III PolC-type4.3e-0827.59Show/hide
Query:  TVIIFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH--GITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTF
        T ++FD+ETTG S   D+I+E+A   +  GE    F+   NP   +  ++++   IT+ M++  D P ++E++    +++       G  + VAHNA +F
Subjt:  TVIIFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH--GITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTF

Query:  DVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDLK-LGIPDLIERSFTALDLI
        D+ F+   + R       N +  D + L+R +    +++  K  L  L + Y V L    HRA+ D  + + I  ++   +K LG+ + +E        I
Subjt:  DVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDLK-LGIPDLIERSFTALDLI

Query:  NKK
        NKK
Subjt:  NKK

Q682U6 Exonuclease DPD1, chloroplastic/mitochondrial1.9e-6141.8Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R++++T              +N ++ +L  +V  +  +     E
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL
        +S T+   + ++QQ + ++K+L+  +TVI+ D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI N MV RP+VPRM+ELIPI 
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL

Query:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ
        L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +IP NWL  D++ LAR+ MKS +  +    +L+AL +YY++   G AHRA+SDV  LS + Q
Subjt:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ

Query:  RLTFDLKLGIPDLIERSFTALDL
        +LT DLKL + DL+ R  TA D+
Subjt:  RLTFDLKLGIPDLIERSFTALDL

Q895K2 DNA polymerase III PolC-type2.0e-1332.6Show/hide
Query:  IIFDIETTGFSRNLDRIVEI-ALQDLSGGENSTFQTLINPECYIPNSVVH--GITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDV
        ++FDIETTGFS   D+I+EI A++   G     + T +NPE  IP  ++   GI + MV   D P+++E++P  + FI+         +LVAHNA  FDV
Subjt:  IIFDIETTGFSRNLDRIVEI-ALQDLSGGENSTFQTLINPECYIPNSVVH--GITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDV

Query:  PFLLKEFSRCSVDIPLNWLFFDNMLL-ARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDLK
         F+ K      +        F+N +L    L K    ++ +  L  + ++  +PL+ + HRA+ D ++   IL +   DLK
Subjt:  PFLLKEFSRCSVDIPLNWLFFDNMLL-ARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDLK

Q8RA32 DNA polymerase III PolC-type7.0e-1130.69Show/hide
Query:  IIFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSV--VHGITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDV
        ++FDIETTG S   D I+EI    +   +   TF+T +NP+  I + +  + GI   MV   D P ++E++P  L+F K         +LVAHNA  FDV
Subjt:  IIFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSV--VHGITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDV

Query:  PFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDL-KLGIPDLIE
         F+  +  +  + +    L  D + L+R L +     +    L  L E++ V L+   HRA+ D ++ + I  ++   L ++GI  + E
Subjt:  PFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDL-KLGIPDLIE

Q8XJR3 DNA polymerase III PolC-type7.0e-1132.37Show/hide
Query:  IIFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH--GITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDV
        ++FDIETTGFS   D+I+EI    L  GE   +F T ++P+  IP  +     IT  MV+    P + E++P  ++F+       G  +LVAHNA  FDV
Subjt:  IIFDIETTGFSRNLDRIVEIALQDLSGGE-NSTFQTLINPECYIPNSVVH--GITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDV

Query:  PFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ
         F+ K      +   L     D + LAR L       + K+ L  + ++  + L  + HRA+ D ++ + IL+
Subjt:  PFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ

Arabidopsis top hitse value%identityAlignment
AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-6241.8Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R++++T              +N ++ +L  +V  +  +     E
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL
        +S T+   + ++QQ + ++K+L+  +TVI+ D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI N MV RP+VPRM+ELIPI 
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL

Query:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ
        L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +IP NWL  D++ LAR+ MKS +  +    +L+AL +YY++   G AHRA+SDV  LS + Q
Subjt:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ

Query:  RLTFDLKLGIPDLIERSFTALDL
        +LT DLKL + DL+ R  TA D+
Subjt:  RLTFDLKLGIPDLIERSFTALDL

AT5G26940.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-6241.8Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R++++T              +N ++ +L  +V  +  +     E
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL
        +S T+   + ++QQ + ++K+L+  +TVI+ D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI N MV RP+VPRM+ELIPI 
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL

Query:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ
        L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +IP NWL  D++ LAR+ MKS +  +    +L+AL +YY++   G AHRA+SDV  LS + Q
Subjt:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ

Query:  RLTFDLKLGIPDLIERSFTALDL
        +LT DLKL + DL+ R  TA D+
Subjt:  RLTFDLKLGIPDLIERSFTALDL

AT5G26940.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-6241.8Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R++++T              +N ++ +L  +V  +  +     E
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL
        +S T+   + ++QQ + ++K+L+  +TVI+ D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI N MV RP+VPRM+ELIPI 
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL

Query:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ
        L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +IP NWL  D++ LAR+ MKS +  +    +L+AL +YY++   G AHRA+SDV  LS + Q
Subjt:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ

Query:  RLTFDLKLGIPDLIERSFTALDL
        +LT DLKL + DL+ R  TA D+
Subjt:  RLTFDLKLGIPDLIERSFTALDL

AT5G26940.4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-6241.8Show/hide
Query:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE
        MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R++++T              +N ++ +L  +V  +  +     E
Subjt:  MCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSE

Query:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL
        +S T+   + ++QQ + ++K+L+  +TVI+ D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI N MV RP+VPRM+ELIPI 
Subjt:  KSETQKLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECY-IPNSVVHGITNRMVSRPDVPRMKELIPIL

Query:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ
        L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +IP NWL  D++ LAR+ MKS +  +    +L+AL +YY++   G AHRA+SDV  LS + Q
Subjt:  LQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKI-TKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQ

Query:  RLTFDLKLGIPDLIERSFTALDL
        +LT DLKL + DL+ R  TA D+
Subjt:  RLTFDLKLGIPDLIERSFTALDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACAGGTCCAATGTGCTTTTCAATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTCTGGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGACCAGGAATTATGG
TCATAGTTCTTGGTATGATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACCAGAAAATCTATGACCACCAAAGCAGGGAGGAAAGCAA
AAGCCAACCCTAGCAGTAAACCGACCAACATCAGGAATGAAATCCTAGAGGAATCGGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAG
AAGCTTCAGTATTGTGATATTCAACAAACAATTATTAAGAACAAGGAATTGGCTCCCCCAGTGACGGTTATAATCTTCGACATTGAAACGACAGGTTTTAGTAGAAACCT
CGATAGAATAGTGGAAATTGCTCTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACGTTAATAAATCCAGAGTGCTATATTCCTAATTCAGTTGTACATGGCA
TTACAAACCGAATGGTCAGTAGACCCGATGTTCCAAGGATGAAGGAACTTATTCCGATTTTATTACAATTTATCAAAAGCCGTCAGAAACCTGATGGTTATGTATTATTG
GTAGCTCATAATGCTCGTACATTTGACGTGCCCTTTTTACTCAAGGAATTCAGCCGTTGCTCTGTTGATATTCCTCTAAATTGGCTATTTTTCGATAATATGCTTTTAGC
CCGTCAATTGATGAAGTCCTCAGATTCAAAGATTACGAAAATCACGTTACAAGCTCTTCGTGAGTATTACAATGTTCCATTGGTGGGTTCAGCTCACAGAGCAATGTCGG
ATGTGAGGTCGTTGTCGTTGATTCTTCAGAGGCTTACTTTCGATCTCAAGCTAGGTATCCCGGATCTCATTGAAAGATCTTTCACTGCTTTAGATCTAATTAATAAGAAG
AAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAACAGGTCCAATGTGCTTTTCAATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTCTGGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGACCAGGAATTATGG
TCATAGTTCTTGGTATGATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACCAGAAAATCTATGACCACCAAAGCAGGGAGGAAAGCAA
AAGCCAACCCTAGCAGTAAACCGACCAACATCAGGAATGAAATCCTAGAGGAATCGGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAG
AAGCTTCAGTATTGTGATATTCAACAAACAATTATTAAGAACAAGGAATTGGCTCCCCCAGTGACGGTTATAATCTTCGACATTGAAACGACAGGTTTTAGTAGAAACCT
CGATAGAATAGTGGAAATTGCTCTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACGTTAATAAATCCAGAGTGCTATATTCCTAATTCAGTTGTACATGGCA
TTACAAACCGAATGGTCAGTAGACCCGATGTTCCAAGGATGAAGGAACTTATTCCGATTTTATTACAATTTATCAAAAGCCGTCAGAAACCTGATGGTTATGTATTATTG
GTAGCTCATAATGCTCGTACATTTGACGTGCCCTTTTTACTCAAGGAATTCAGCCGTTGCTCTGTTGATATTCCTCTAAATTGGCTATTTTTCGATAATATGCTTTTAGC
CCGTCAATTGATGAAGTCCTCAGATTCAAAGATTACGAAAATCACGTTACAAGCTCTTCGTGAGTATTACAATGTTCCATTGGTGGGTTCAGCTCACAGAGCAATGTCGG
ATGTGAGGTCGTTGTCGTTGATTCTTCAGAGGCTTACTTTCGATCTCAAGCTAGGTATCCCGGATCTCATTGAAAGATCTTTCACTGCTTTAGATCTAATTAATAAGAAG
AAAAACTAG
Protein sequenceShow/hide protein sequence
MITGPMCFSILRVPKFGVPTLANLWRENFHPLTRNYGHSSWYDQLGFRIYNLEGGQNKRWTRKSMTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQ
KLQYCDIQQTIIKNKELAPPVTVIIFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLL
VAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNMLLARQLMKSSDSKITKITLQALREYYNVPLVGSAHRAMSDVRSLSLILQRLTFDLKLGIPDLIERSFTALDLINKK
KN