CuGenDBv2

Gene ID	Lsi06G000770
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Genome location	chr06:701975..702281
RNA-Seq Expression	Lsi06G000770
Synteny	Lsi06G000770
Gene Ontology terms	GO:0006754 - ATP biosynthetic process (biological process) GO:0022900 - electron transport chain (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0015078 - proton transmembrane transporter activity (molecular function) GO:0043167 - ion binding (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF9593771.1 hypothetical protein IFM89_025396 [Coptis chinensis]

4.8e-16

72.37

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIF+IGQDSPVYG FSMVPVVASL    + SRFDFDR        PRQ +LILTAGTVTMKMAP LVRLYEQ+ EP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

QXO15071.1 NAD(P)H-quinone oxidoreductase subunit K [Paphiopedilum wenshanense]

1.1e-15

70.13

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLH-LSSRFDFDR--------PRQANLILTAGTVTMKMA-PLVRLYEQIPEP
        MI  IGQDSPVYGCFSMV VV SLN LH +  RFDFDR        PRQA+LILTAGTVT+KMA  LVRLY+Q+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLH-LSSRFDFDR--------PRQANLILTAGTVTMKMA-PLVRLYEQIPEP

YP_009316316.1 NADH-plastoquinone oxidoreductase subunit K [Castilleja paramensis]

2.8e-16

72.15

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIGQDS VYG FS  PVV  LN LH S   SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

YP_009433195.1 NADH-plastoquinone oxidoreductase subunit K [Pedicularis cheilanthifolia]

6.7e-18

73.42

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIG DSPVYG FSMVP V  LN LH S   SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

YP_009734448.1 NADH-plastoquinone oxidoreductase subunit K [Pedicularis resupinata]

4.4e-17

73.42

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIGQDS VYG FSM PVV  LN LH S   SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

TrEMBL top hits

e value

%identity

Alignment

A0A1D6YXC0 NADH-plastoquinone oxidoreductase subunit K

1.4e-16

72.15

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIGQDS VYG FS  PVV  LN LH S   SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A0A290WN23 NADH-plastoquinone oxidoreductase subunit K

3.3e-18

73.42

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIG DSPVYG FSMVP V  LN LH S   SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A0A5B6U7V0 NADH dehydrogenase subunit K

3.0e-11

57.14

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Query:  MIFQIGQDSPVYGCFSMVPVVASLN-------SLHLSSRFDFDR---------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIF+IGQDSPVYG FS +   + L             SRFDFD          PRQA+LI TAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLN-------SLHLSSRFDFDR---------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A0A6G7SDR6 NADH-plastoquinone oxidoreductase subunit K

2.6e-15

68.35

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIGQDS VY  FS+ P+V  LN LH S   SRFDFDR        PRQA+LILTAGTVTMK AP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A0A6G7SEC4 NADH-plastoquinone oxidoreductase subunit K

2.1e-17

73.42

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Query:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        MIFQIGQDS VYG FSM PVV  LN LH S   SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  MIFQIGQDSPVYGCFSMVPVVASLNSLHLS---SRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

SwissProt top hits

e value

%identity

Alignment

A1EA12 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

1.6e-09

72.92

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Query:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        + SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A4QJB9 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

1.6e-09

72.92

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Query:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        + SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A4QJK3 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

1.6e-09

72.92

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Query:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        + SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

A9LYA5 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

1.6e-09

72.92

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Query:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        + SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

Q3V530 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

1.6e-09

72.92

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Query:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        + SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

Arabidopsis top hits

e value

%identity

Alignment

AT5G11770.1 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial

2.7e-04

44.68

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Query:  SSRFDFDR--------PRQANLILTAGTVTMKMAPLVR-LYEQIPEP
        ++R+D DR        PRQ++ ++ AGT+T KMAP +R +Y+Q+PEP
Subjt:  SSRFDFDR--------PRQANLILTAGTVTMKMAPLVR-LYEQIPEP

ATCG00430.1 photosystem II reaction center protein G

1.1e-10

72.92

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Query:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP
        + SRFDFDR        PRQA+LILTAGTVTMKMAP LVRLYEQ+PEP
Subjt:  LSSRFDFDR--------PRQANLILTAGTVTMKMAP-LVRLYEQIPEP

Sequences

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CDS sequence

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ATGATCTTTCAAATTGGTCAAGACTCTCCTGTTTATGGCTGCTTCTCTATGGTACCAGTTGTTGCTTCATTGAATTCGCTTCATTTAAGTTCACGATTCGACTTTGATCG
TCCTAGACAAGCAAACTTAATTTTAACCGCAGGTACGGTAACAATGAAAATGGCTCCTTTAGTAAGATTATATGAACAAATACCTGAACCAGTTGTTGGTTCCAAAGCAA
GAAAGTTAGATGTGAAA

mRNA sequence

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TTTCCCTTACTTGATCGAACAACCCAAACTTCAGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCCTGTTTATGGCTGCTTCTCTATGGTACCAG
TTGTTGCTTCATTGAATTCGCTTCATTTAAGTTCACGATTCGACTTTGATCGTCCTAGACAAGCAAACTTAATTTTAACCGCAGGTACGGTAACAATGAAAATGGCTCCT
TTAGTAAGATTATATGAACAAATACCTGAACCAGTTGTTGGTTCCAAAGCAAGAAAGTTAGATGTGAAA

Protein sequence

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MIFQIGQDSPVYGCFSMVPVVASLNSLHLSSRFDFDRPRQANLILTAGTVTMKMAPLVRLYEQIPEPVVGSKARKLDVK

Lsi06G000770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome