CuGenDBv2

Gene ID	Lsi06G000900
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	serine/arginine-rich splicing factor 11
Genome location	chr06:911772..916128
RNA-Seq Expression	Lsi06G000900
Synteny	Lsi06G000900
Gene Ontology terms	GO:0016853 - isomerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008450603.1 PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo]

5.5e-44

82.58

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSS+ TS +SDSSSSSSRRRRRRRTRREKDRDTLR+RKKSRSHSKRHRRHRRSSSDSLSSSDSES+Y+ SNSSS+SEPETS RSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL
        ERERSRSHHHKRRKHKAKE              FLAREKDDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL

XP_011659818.1 NKAP family protein isoform X2 [Cucumis sativus]

3.7e-40

78.71

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAA+SS+ TS +SDSSSSSSRRRRRR+TRR+KDRDTLR+RKKSRSHSKRHRRHRRSSSDSLSS+DSES+YS    SS+SEPETS RSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL
        ERERSRSHHHKRRKHKAKE              FLAREKDDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL

XP_022136184.1 serine/arginine-rich splicing factor 11 [Momordica charantia]

1.4e-42

80.77

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSSS TS+TSDSSSSSSRRRRRRR+RR+KDRD LR+RKKSRSHSKR RRHRRSSSDSLSSSDSES YS S SSSQSEPETSGRSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL
        ERERS+SHHHKRRKHKAKE               FLAREKDDG RRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL

XP_031738322.1 NKAP family protein isoform X1 [Cucumis sativus]

3.4e-41

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAA+SS+ TS +SDSSSSSSRRRRRR+TRR+KDRDTLR+RKKSRSHSKRHRRHRRSSSDSLSS+DSES+YS  NSSS+SEPETS RSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL
        ERERSRSHHHKRRKHKAKE              FLAREKDDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL

XP_038879353.1 NKAP family protein [Benincasa hispida]

3.5e-46

85.16

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSSS TSYTSDSSSSSSRRRRRRR RREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSES+YS +NSSSQSEPETSGRSKRHK+NDRAK+DK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL
        ERERSRSHHHKRRKHKAKE              FLAREKDDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVZ3 Uncharacterized protein

1.8e-40

78.71

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAA+SS+ TS +SDSSSSSSRRRRRR+TRR+KDRDTLR+RKKSRSHSKRHRRHRRSSSDSLSS+DSES+YS    SS+SEPETS RSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL
        ERERSRSHHHKRRKHKAKE              FLAREKDDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL

A0A1S3BQ85 peptidyl-prolyl cis-trans isomerase G

2.7e-44

82.58

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSS+ TS +SDSSSSSSRRRRRRRTRREKDRDTLR+RKKSRSHSKRHRRHRRSSSDSLSSSDSES+Y+ SNSSS+SEPETS RSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL
        ERERSRSHHHKRRKHKAKE              FLAREKDDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE--------------FLAREKDDGTRRSAVSGKKLQL

A0A6J1C3K8 serine/arginine-rich splicing factor 11

6.6e-43

80.77

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSSS TS+TSDSSSSSSRRRRRRR+RR+KDRD LR+RKKSRSHSKR RRHRRSSSDSLSSSDSES YS S SSSQSEPETSGRSKRHKKNDR KKDK
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL
        ERERS+SHHHKRRKHKAKE               FLAREKDDG RRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL

A0A6J1HZG5 probable splicing factor, arginine/serine-rich 7 isoform X1

1.6e-36

77.56

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSSS + YTSDSSSSSSRRRRRRRTRREKDRD LR+RKKSRSHSKR RRHRRSSS+SLSSSDSES+YS S+SSSQSEPE SGRSKRHKKND  K  K
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL
        ERERS+S HHKRRKHKAKE               FLARE DDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL

A0A6J1I4D4 NKAP family protein isoform X2

6.0e-36

76.92

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Query:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK
        MAASSSS + YTSDSSSSSSRRRRRRRTRREKDRD LR+RKKSRSHSKR RRHRRSSS+SLSSSDSES+YS S+SSSQSEPE SGRSKRHKKND  KK  
Subjt:  MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDK

Query:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL
         RERS+S HHKRRKHKAKE               FLARE DDGTRRSAVSGKK+ L
Subjt:  ERERSRSHHHKRRKHKAKE---------------FLAREKDDGTRRSAVSGKKLQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G27860.1 unknown protein

1.3e-14

52.53

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Query:  MAASSSSVTSYTSDSSSSSSRRR--RRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKK
        MAASSSS +S  S  SS S RRR  RR   R ++DRD+L+VRKKSRS SK+ RR R+ SSDS  SS S+S    S+ SS SE E   +S+RHKK+++ KK
Subjt:  MAASSSSVTSYTSDSSSSSSRRR--RRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKK

Query:  DKERERSRSHHHKRRKH---------------KAKEFLAREKDDGTRRSAVSGKKLQL
         K++ERS+SH HKR K+               K  +FL R+KDDG RRSAVSGKK+ L
Subjt:  DKERERSRSHHHKRRKH---------------KAKEFLAREKDDGTRRSAVSGKKLQL

AT5G27860.2 unknown protein

1.3e-14

52.53

Show/hide

Query:  MAASSSSVTSYTSDSSSSSSRRR--RRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKK
        MAASSSS +S  S  SS S RRR  RR   R ++DRD+L+VRKKSRS SK+ RR R+ SSDS  SS S+S    S+ SS SE E   +S+RHKK+++ KK
Subjt:  MAASSSSVTSYTSDSSSSSSRRR--RRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKK

Query:  DKERERSRSHHHKRRKH---------------KAKEFLAREKDDGTRRSAVSGKKLQL
         K++ERS+SH HKR K+               K  +FL R+KDDG RRSAVSGKK+ L
Subjt:  DKERERSRSHHHKRRKH---------------KAKEFLAREKDDGTRRSAVSGKKLQL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCCTCATCTTCCTCTGTGACATCTTACACTTCCGATTCATCGTCTTCTTCTTCTCGTCGTCGTCGCCGCCGAAGAACTCGCCGTGAAAAAGATCGGGAC
ACGCTTAGGGTTCGCAAGAAGTCTCGTTCTCATTCTAAACGCCATCGCAGGCACCGCCGCTCCTCCTCCGATTCTCTCTCTTCCTCCGACTCAGAATCCAATTAC
TCCGGAAGCAATAGCTCTTCTCAAAGTGAGCCTGAAACGTCGGGCCGTTCAAAGCGGCATAAGAAGAATGATAGAGCAAAGAAGGATAAGGAGAGGGAGCGAAGT
AGGAGCCATCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGTTTTTAGCGCGGGAGAAGGATGATGGTACACGGCGGAGTGCTGTCTCTGGCAAAAAGCTCCAA
CTTCCAGAGGTGAGTCGTGCTTCAGCCTTTTCTGATCGGCCTCTGCATCGGCTATCAGAGTATGAGGACGAGCTTTTCTCATACTTGTTGCTACCTCGCCCACCA
CCTTTTGTGTGA

mRNA sequence

Show/hide mRNA sequence

GTTTTCTTCTGCTCGATCTAGGGTTTCGTTTTGCTTTTTTTGTGTTCCCTTTTGGATTTTTGGTGTGCTGTATTTTTATATTTTGAATTGATTGCGATTTGCTCC
AGTCTTGGAGCTTGACTTGCGGATCCATCAATTTGAGGAATAGGGAAGGATAGTTGGCAACGATATAATGATGATTATATATCCTCACTGTAACTTGAAATATAT
TGCTGATCAATGGCGGCCTCATCTTCCTCTGTGACATCTTACACTTCCGATTCATCGTCTTCTTCTTCTCGTCGTCGTCGCCGCCGAAGAACTCGCCGTGAAAAA
GATCGGGACACGCTTAGGGTTCGCAAGAAGTCTCGTTCTCATTCTAAACGCCATCGCAGGCACCGCCGCTCCTCCTCCGATTCTCTCTCTTCCTCCGACTCAGAA
TCCAATTACTCCGGAAGCAATAGCTCTTCTCAAAGTGAGCCTGAAACGTCGGGCCGTTCAAAGCGGCATAAGAAGAATGATAGAGCAAAGAAGGATAAGGAGAGG
GAGCGAAGTAGGAGCCATCACCATAAAAGGCGTAAGCATAAAGCTAAAGAGTTTTTAGCGCGGGAGAAGGATGATGGTACACGGCGGAGTGCTGTCTCTGGCAAA
AAGCTCCAACTTCCAGAGGTGAGTCGTGCTTCAGCCTTTTCTGATCGGCCTCTGCATCGGCTATCAGAGTATGAGGACGAGCTTTTCTCATACTTGTTGCTACCT
CGCCCACCACCTTTTGTGTGA

Protein sequence

Show/hide protein sequence

MAASSSSVTSYTSDSSSSSSRRRRRRRTRREKDRDTLRVRKKSRSHSKRHRRHRRSSSDSLSSSDSESNYSGSNSSSQSEPETSGRSKRHKKNDRAKKDKERERS
RSHHHKRRKHKAKEFLAREKDDGTRRSAVSGKKLQLPEVSRASAFSDRPLHRLSEYEDELFSYLLLPRPPPFV

Lsi06G000900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome