CuGenDBv2

Gene ID	Lsi06G001080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	SOSS complex subunit B-like protein
Genome location	chr06:1042688..1046852
RNA-Seq Expression	Lsi06G001080
Synteny	Lsi06G001080
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]

2.9e-57

98.23

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSNKYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]

2.9e-57

98.23

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSNKYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

2.1e-55

94.69

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDTTNS KYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]

2.1e-55

93.81

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTT+EGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MVFVETPNMSEIHWVPDTTNS KYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

1.0e-57

99.12

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MT MEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LW03 Uncharacterized protein

1.4e-57

98.23

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSNKYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

A0A1S3BPN4 SOSS complex subunit B homolog

1.4e-57

98.23

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSNKYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

A0A5D3CIR3 SOSS complex subunit B-like protein

1.4e-57

98.23

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDT NSNKYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

A0A6J1HAL0 SOSS complex subunit B homolog

1.0e-55

94.69

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDTTNS KYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        VLSPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

A0A6J1HZ66 SOSS complex subunit B homolog

1.9e-54

92.04

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Query:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES
        MTTM+GQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT+NS KYVKES
Subjt:  MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKES

Query:  VLSPYSRIFPPIR
        V+SPYSRIFPPIR
Subjt:  VLSPYSRIFPPIR

SwissProt top hits

e value

%identity

Alignment

A6QLK2 SOSS complex subunit B1

1.8e-09

43.48

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Query:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
        VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE

Q3SWT1 SOSS complex subunit B1

2.8e-10

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Query:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTN-SNKYVK--ESVLSPYSRIFPP
        VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T   SNK V+   S  +P +   PP
Subjt:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTN-SNKYVK--ESVLSPYSRIFPP

Q66K94 SOSS complex subunit B1

4.0e-09

43.48

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Query:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
        VAD+T +++  +W D  + ++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE

Q8R2Y9 SOSS complex subunit B1

6.2e-10

39.56

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Query:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNS-NKYVKESVLSP
        VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE +   +T  + NK V+ +  SP
Subjt:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNS-NKYVKESVLSP

Q9BQ15 SOSS complex subunit B1

1.8e-09

43.48

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Query:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE
        VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

1.4e-38

66.67

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Query:  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKESVLSPYSRIFP
        C +L ADETAAVH QLWGDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N  +Y++  V+S YSRIFP
Subjt:  CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKESVLSPYSRIFP

Query:  PI
        P+
Subjt:  PI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACAACAATGGAAGGACAAAACAAGGCATGCCAATCTCTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTCGTTGAGCCGAG
CGACATTATACGCTTGACGAATGGGATATTTTCGTACAGCCGAAACAATAATCTGGTGTTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTAGGAGAGTTCAAGATGG
TGTTTGTAGAGACACCAAATATGAGTGAAATCCATTGGGTTCCAGACACCACTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCCTATTCTCGCATCTTTCCT
CCCATCCGCCTCTTTGTGGATCAAGACAAGGATACCATCTGTTTCTCGCCGAACTTTCATTGGGGATTTTGTATAACCAGAGCTAGATTCCAGTGTTATGTAGATCTTGA
TTTTAGCTCAAAGTGTCCCACAGTT

mRNA sequence

Show/hide mRNA sequence

TTTTTTTTATGCAATTATTCCATCCGTATTCCTTTTAGGCCCTAACCTTTGAAATTACTCTGTACTAGTTTCAGACTGATCGAAAAGCTTTTGGGACGACGAGGATTGGT
GGATCCAAGAACAAGTTAGAGCCAAACAGTTTTGGAATTGGTATTAAGTTTTCCTCAAAAAATGGCTATCCCTCTGTTGGGGAGACCTCTGTTGCCGGAATTTCTCATCT
TCTGCCGGAAAACTGTGACTCTTCAGCCAAAGATTTGGTGCCAGCAGCCCAGAACAACGTGAATACACAATTCATAGTTTTAGTGAAAGGCATGACAACAATGGAAGGAC
AAAACAAGGCATGCCAATCTCTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTCGTTGAGCCGAGCGACATTATACGCTTGACG
AATGGGATATTTTCGTACAGCCGAAACAATAATCTGGTGTTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAA
TATGAGTGAAATCCATTGGGTTCCAGACACCACTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCCTATTCTCGCATCTTTCCTCCCATCCGCCTCTTTGTGG
ATCAAGACAAGGATACCATCTGTTTCTCGCCGAACTTTCATTGGGGATTTTGTATAACCAGAGCTAGATTCCAGTGTTATGTAGATCTTGATTTTAGCTCAAAGTGTCCC
ACAGTT

Protein sequence

Show/hide protein sequence

MTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNKYVKESVLSPYSRIFP
PIRLFVDQDKDTICFSPNFHWGFCITRARFQCYVDLDFSSKCPTV

Lsi06G001080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome