CuGenDBv2

Gene ID	Lsi06G001110
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ER membrane protein complex subunit 6
Genome location	chr06:1074274..1077919
RNA-Seq Expression	Lsi06G001110
Synteny	Lsi06G001110
Gene Ontology terms	GO:0000045 - autophagosome assembly (biological process) GO:0072546 - ER membrane protein complex (cellular component)
InterPro domains	IPR008504 - ER membrane protein complex subunit 6 IPR029008 - Rab5-interacting protein family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6597582.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-41

90.38

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

KAG7029026.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-41

91.26

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM
        GLM
Subjt:  GLM

XP_022137968.1 ER membrane protein complex subunit 6 [Momordica charantia]

4.2e-42

92.31

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSSAASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITSL LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

XP_022937062.1 ER membrane protein complex subunit 6 [Cucurbita moschata]

6.1e-41

90.38

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

XP_022972030.1 ER membrane protein complex subunit 6 [Cucurbita maxima]

3.6e-41

91.35

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LZ06 ER membrane protein complex subunit 6

5.1e-41

74.24

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS AS+KKSSD ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTGFIFYFLVMAITS+ALAAKA FS HSYFES NQIL DGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLM---------NSEYSSFNTSLVIPSKRNQM
        GLM         +  +SS   S   P+  N++
Subjt:  GLM---------NSEYSSFNTSLVIPSKRNQM

A0A1S3BQB0 ER membrane protein complex subunit 6

5.1e-41

90.38

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS AS+KKSSD+ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITS+ALAAKA FS HSYFES NQILLDGFL 
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

A0A6J1CBS9 ER membrane protein complex subunit 6

2.1e-42

92.31

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSSAASEKKS++AADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFI YFLVMAITSL LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

A0A6J1FFH8 ER membrane protein complex subunit 6

3.0e-41

90.38

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

A0A6J1I7D9 ER membrane protein complex subunit 6

1.7e-41

91.35

Show/hide

Query:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS
        MAGYSS ASEKKSSDA DDLPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKA FS HSYFESWNQILLDGFLS
Subjt:  MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLS

Query:  GLMN
        GLM+
Subjt:  GLMN

SwissProt top hits

e value

%identity

Alignment

Q3ZCG8 ER membrane protein complex subunit 6

4.6e-07

39.02

Show/hide

Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA    + YF+S   +   G + GL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL

Q68EU8 ER membrane protein complex subunit 6

2.3e-06

Show/hide

Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF+S   +   G + GL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL

Q6GLC5 ER membrane protein complex subunit 6

1.7e-06

Show/hide

Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + SL L  K+    + YF+S   +   G + GL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL

Q9BV81 ER membrane protein complex subunit 6

2.7e-07

39.02

Show/hide

Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA    + YF+S   +   G + GL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL

Q9CQW0 ER membrane protein complex subunit 6

2.7e-07

39.02

Show/hide

Query:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL
        P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + SL L  KA    + YF+S   +   G + GL
Subjt:  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGL

Arabidopsis top hits

e value

%identity

Alignment

AT5G49540.1 Rab5-interacting family protein

4.0e-30

65.98

Show/hide

Query:  ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN
        +SEK+S D   D+P F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+VM ITS+ L AKA FS+  YF+SWN++L DGFL GLM+
Subjt:  ASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGCAGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTA
CAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTG
CACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGCTGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTC
AACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTGGCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATC
AAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGAGATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCG
AGACTGGGAATTCCAAACAGTAA

mRNA sequence

Show/hide mRNA sequence

AACACTTTGGTTCTTTCTCTGGGTTCTCCCCTCTACCATCTCTACCACAATCGCAAGTCGCACATCACCATCAGCTCCCTTCTCCCTCTCCATCGCTGCCATTATCGGTC
GCCGGCTTCCTCCCATTTTCCGTTTCCTGGTATTTAACTTCAGATCATACGGCGGCAGAAGTTATGGCGGGATACTCCTCCGCTGCTTCTGAGAAGAAATCGTCTGATGC
AGCCGACGATTTACCGATCTTCAATGCCGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTT
TGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCACTTGCACTTGCAGCCAAGGCTGCATTTTCCTCTCATTCATATTTTGAAAGC
TGGAACCAGATTCTACTCGATGGCTTTCTGAGTGGGCTTATGAATTCAGAGTATAGTAGTTTCAACACTAGCTTAGTCATTCCTTCCAAGAGAAATCAAATGAGATTTTG
GCAAAGAGGTAAGGTTAAGGCTTCAATGGGTCTGCACGGTCAGGGTTTTGGAGACTTTGGATCAAGTGGTGCCTTTGAAAGGGAGTCTTTTAATATTTGGTCCCTTATGA
GATCTAATGTCACCCTGAATTCGAATTCTAGAGTAGCTGCAGCTTTCTGTACAATTCGACTCGAGACTGGGAATTCCAAACAGTAA

Protein sequence

Show/hide protein sequence

MAGYSSAASEKKSSDAADDLPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSLALAAKAAFSSHSYFESWNQILLDGFLSGLMNSEYSSF
NTSLVIPSKRNQMRFWQRGKVKASMGLHGQGFGDFGSSGAFERESFNIWSLMRSNVTLNSNSRVAAAFCTIRLETGNSKQ

Lsi06G001110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome