; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G001140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G001140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionT-box protein 41
Genome locationchr06:1107794..1112515
RNA-Seq ExpressionLsi06G001140
SyntenyLsi06G001140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135610.1 uncharacterized protein LOC101205785 [Cucumis sativus]4.8e-5985.71Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MG PS+SL+ TIFLSLSLS+TPFAL PNYNK  PIPKATPSDLLNLLGSKSQAS+VNP VAKELKSCFKFLVPFHPT S AK S RRSLRST FD+R  R
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARL VDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
XP_022961440.1 uncharacterized protein LOC111462023 [Cucurbita moschata]6.5e-6490Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MGNPS+SLRFT+FLSLSLSITPFALS NY K SPIPKA PSDLLNLLGSKSQASTVNP+VAKE++SCFKFLVPFHPT SIAKCSSRRSLRS+RFD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARLAVDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
XP_022968759.1 uncharacterized protein LOC111467901 [Cucurbita maxima]3.5e-6288.57Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MGNPS+SLRFT+FLSLSLSITPFALS NY K SPIPKA PSDLLNLLGSKSQASTVNP+VAKE++SCFKFLVPFHPT SI K SSRRSLRS+RFD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARLAVDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
XP_023515948.1 uncharacterized protein LOC111779958 [Cucurbita pepo subsp. pepo]2.9e-6490.71Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MGNPS+SLRFT+FLSLSLSITPFALS NY K SPIPKA PSDLLNLLGSKSQASTVNP+VAKE+KSCFKFLVPFHPT SIAKCSSRRSLRS+RFD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARLAVDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
XP_038878944.1 uncharacterized protein LOC120071032 [Benincasa hispida]9.3e-6390Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MGNPS+S RFTIFLSLSLS+TPFALS  YNKRSPIPKATPSDLLNLLGSKSQAS+VNP+VAKELKSCFKFLVPFH T  IAK SSRRSLRSTRFDNR RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARL VDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
TrEMBL top hitse value%identityAlignment
A0A0A0LW06 Uncharacterized protein2.3e-5985.71Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MG PS+SL+ TIFLSLSLS+TPFAL PNYNK  PIPKATPSDLLNLLGSKSQAS+VNP VAKELKSCFKFLVPFHPT S AK S RRSLRST FD+R  R
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARL VDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
A0A1S3BQN4 uncharacterized protein LOC1034921594.0e-5985.71Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MG  S+SL+FTIFLSLSLS+TPFAL  NYNK  PIPKATPSDLLNLLGSKSQAS+VNP VAKELKSCFKFLVPFHPT S AK S RRSLRST FD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARL VDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
A0A5D3CG84 T-box protein 414.0e-5985.71Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MG  S+SL+FTIFLSLSLS+TPFAL  NYNK  PIPKATPSDLLNLLGSKSQAS+VNP VAKELKSCFKFLVPFHPT S AK S RRSLRST FD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARL VDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
A0A6J1HA77 uncharacterized protein LOC1114620233.1e-6490Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MGNPS+SLRFT+FLSLSLSITPFALS NY K SPIPKA PSDLLNLLGSKSQASTVNP+VAKE++SCFKFLVPFHPT SIAKCSSRRSLRS+RFD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARLAVDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
A0A6J1I0L2 uncharacterized protein LOC1114679011.7e-6288.57Show/hide
Query:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR
        MGNPS+SLRFT+FLSLSLSITPFALS NY K SPIPKA PSDLLNLLGSKSQASTVNP+VAKE++SCFKFLVPFHPT SI K SSRRSLRS+RFD+R RR
Subjt:  MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRR

Query:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
        EEDELVWWPP SVLELARLAVDSGGDPGAIHRTLDPAIIP
Subjt:  EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27710.1 unknown protein2.2e-3353.38Show/hide
Query:  MGNPSVSLRFTIFLSLSL-SITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPF---HPTLSIAKCSSRRSLRSTRFDN
        M N  V LRFTIF+S S+ + + F L    +  S  PKAT  DLL++LG  S AS +NP V++E+KSC KFLVPF    P     +CS R  L S + D 
Subjt:  MGNPSVSLRFTIFLSLSL-SITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPF---HPTLSIAKCSSRRSLRSTRFDN

Query:  RRRR----EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP
          RR    EE+ L+WWPP SVLELARLAVDSGGDPG+I RTL+P +IP
Subjt:  RRRR----EEDELVWWPPPSVLELARLAVDSGGDPGAIHRTLDPAIIP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAATCCTTCAGTCTCTCTCAGATTCACCATTTTCCTCTCCCTCTCTCTCTCAATCACCCCCTTCGCTCTTTCTCCCAATTACAACAAACGATCCCCAATTCCCAA
AGCCACCCCCTCCGATTTGCTCAATCTTCTCGGTTCTAAATCTCAAGCTTCGACTGTCAACCCTACCGTAGCGAAGGAGCTAAAATCCTGTTTCAAATTCCTTGTTCCAT
TCCATCCAACTCTATCCATCGCGAAATGCTCCAGTAGACGAAGCTTGAGGTCAACCAGATTTGATAATCGGAGACGGAGAGAGGAGGATGAGCTTGTTTGGTGGCCGCCT
CCGTCGGTTCTTGAACTCGCTCGCCTTGCTGTTGATTCTGGTGGAGACCCTGGGGCTATCCATCGCACCCTTGATCCTGCTATAATCCCTTAA
mRNA sequenceShow/hide mRNA sequence
TAAAAATTTATTCATTTTTTTTTAAAAAAAAATCAGTAACGAAGAATGAAGAGACTAAATTTGAGATCTATTCAAAGGGCTCAAATAAATTATAGAAAAGCAACTTCAAA
GTATGATGCCAAAATTTTTTTAAGACCCTTAAAATTTTTTTTGGCAATAACTTGGGAGGATGGGGAGAACGGAGAAGGACAATTATTTGCAGAGTTGCTGCCATTGGCTC
TTCGACTCCCACAATCATGAACCATCTTTTATTAATTCCTTTGGTGAAGATATGGCCGATCTGATTCAAACATTTGTAGCACTCCATTGTCATCTTCCTCCCCACTTCTT
CAACTCCATTACTATGCATCTTCAGCAGCTCCACACAGAGGCCTCAAATGGGTAATCCTTCAGTCTCTCTCAGATTCACCATTTTCCTCTCCCTCTCTCTCTCAATCACC
CCCTTCGCTCTTTCTCCCAATTACAACAAACGATCCCCAATTCCCAAAGCCACCCCCTCCGATTTGCTCAATCTTCTCGGTTCTAAATCTCAAGCTTCGACTGTCAACCC
TACCGTAGCGAAGGAGCTAAAATCCTGTTTCAAATTCCTTGTTCCATTCCATCCAACTCTATCCATCGCGAAATGCTCCAGTAGACGAAGCTTGAGGTCAACCAGATTTG
ATAATCGGAGACGGAGAGAGGAGGATGAGCTTGTTTGGTGGCCGCCTCCGTCGGTTCTTGAACTCGCTCGCCTTGCTGTTGATTCTGGTGGAGACCCTGGGGCTATCCAT
CGCACCCTTGATCCTGCTATAATCCCTTAATGTAACAGATACCTGACGTTCATGGATCAAGAAGACACAAATGTGAACTCACAAGAACACCTTATGGGAGACGCTTCATA
AGCGAGGAACTAAATTCATATCTTCAGTTCCTGTTTGAGCTCATTGTTGCTCGATCTTCTGCTATGGGGTTAAACATTACATTGAACCGTTTCGATTTATTTCACGGTCA
TCTGTTTCTTGCTTTCGACAACAACAGGCTTGGTATTTTGTTTCATGCCAAGGAATTCCCAGCTTATGATGAGAAGATTTTTCCATGCAACATGGGTTATTGTCAAATAG
ATGATCTTGGGGATACTGTGGTTGATGTCAACTACTTGGACATTGGCAATGCTTTGGCAAATTATCAAATCTTCATATGCTAATCATCCCTTGGGAATGTTGTGGGGGAA
AAGAACTCTACAATTATGATACCATGACTCTAATTTGTCAAGATAGAAGAATCAATTGGAATCCATCATTTTTAATTGTGCCCCTTTATTTTCTTGCCATTTTTCTTCCT
CGTTGTATGTCGTCG
Protein sequenceShow/hide protein sequence
MGNPSVSLRFTIFLSLSLSITPFALSPNYNKRSPIPKATPSDLLNLLGSKSQASTVNPTVAKELKSCFKFLVPFHPTLSIAKCSSRRSLRSTRFDNRRRREEDELVWWPP
PSVLELARLAVDSGGDPGAIHRTLDPAIIP