CuGenDBv2

Gene ID	Lsi06G001290
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein AUXIN RESPONSE 4
Genome location	chr06:1229898..1234549
RNA-Seq Expression	Lsi06G001290
Synteny	Lsi06G001290
Gene Ontology terms	GO:0009612 - response to mechanical stimulus (biological process) GO:0009733 - response to auxin (biological process) GO:0009926 - auxin polar transport (biological process) GO:0009987 - cellular process (biological process) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050886.1 protein AUXIN RESPONSE 4 [Cucumis melo var. makuwa]

6.1e-36

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF
        EDVADVVADSI+QF+SSLPPTVRKT EEPTPEHI +VFD+S NSD HHHHHDHGSHGIHGAGYMDGYGLGS AWKDVL    V                 
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF

Query:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV
        ILSDTGV LTPPV  VLR SSS++THG  +
Subjt:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV

TYK10238.1 protein AUXIN RESPONSE 4 [Cucumis melo var. makuwa]

8.7e-35

69.23

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF
        EDVADVVADSI+QF+SSLPPTVRKT EEPTPEHI +VFD+S NSD HHHHHDHGSHGIHGAGYMDGYGLGS AWKDVL    V                 
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF

Query:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV
        ILSDTGV LT PV  VLR SSS++THG  +
Subjt:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV

XP_004135783.2 protein AUXIN RESPONSE 4 [Cucumis sativus]

1.5e-23

84.93

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW
        EDVADVVADSI+QF+SSLPPTVRKTAEEPTPEHI + FDES NSDHHHHH H SHGI  AGYM+GYGLGSHAW
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW

XP_008450650.1 PREDICTED: protein AUXIN RESPONSE 4 [Cucumis melo]

9.7e-26

87.84

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAW
        EDVADVVADSI+QF+SSLPPTVRKT EEPTPEHI +VFD+S NSD HHHHHDHGSHGIHGAGYMDGYGLGS AW
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAW

XP_038880139.1 protein AUXIN RESPONSE 4 [Benincasa hispida]

2.0e-31

97.26

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW
        EDVADVVADSIAQFVSSLPPTVRK+AEE TPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M1J7 AB hydrolase-1 domain-containing protein

7.5e-24

84.93

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW
        EDVADVVADSI+QF+SSLPPTVRKTAEEPTPEHI + FDES NSDHHHHH H SHGI  AGYM+GYGLGSHAW
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLGSHAW

A0A1S3BP26 protein AUXIN RESPONSE 4

4.7e-26

87.84

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAW
        EDVADVVADSI+QF+SSLPPTVRKT EEPTPEHI +VFD+S NSD HHHHHDHGSHGIHGAGYMDGYGLGS AW
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAW

A0A5A7U9L3 Protein AUXIN RESPONSE 4

2.9e-36

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF
        EDVADVVADSI+QF+SSLPPTVRKT EEPTPEHI +VFD+S NSD HHHHHDHGSHGIHGAGYMDGYGLGS AWKDVL    V                 
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF

Query:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV
        ILSDTGV LTPPV  VLR SSS++THG  +
Subjt:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV

A0A5D3CG86 Protein AUXIN RESPONSE 4

4.2e-35

69.23

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF
        EDVADVVADSI+QF+SSLPPTVRKT EEPTPEHI +VFD+S NSD HHHHHDHGSHGIHGAGYMDGYGLGS AWKDVL    V                 
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSD-HHHHHDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFV--------------PAF

Query:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV
        ILSDTGV LT PV  VLR SSS++THG  +
Subjt:  ILSDTGVPLTPPVVAVLRRSSSSKTHGTAV

A0A6J1CW32 protein AUXIN RESPONSE 4

1.3e-23

79.73

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHG-IHGAGYMDGYGLGSHAW
        ED ADVVADSIAQFVS+LPPTV KTAEEP PEH+Q+V D SGNSD HHHHDHG+H  IHG GYMDGYGLG H+W
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHG-IHGAGYMDGYGLGSHAW

SwissProt top hits

e value

%identity

Alignment

Q9FZ33 Protein AUXIN RESPONSE 4

1.1e-08

52.17

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLG
        E  +  +AD I++FVS LP ++R+ AEEP PE +QKV +E+   D H HH HG HG   AGY D YGLG
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLG

Arabidopsis top hits

e value

%identity

Alignment

AT1G54990.1 alpha/beta-Hydrolases superfamily protein

7.9e-10

52.17

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Query:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLG
        E  +  +AD I++FVS LP ++R+ AEEP PE +QKV +E+   D H HH HG HG   AGY D YGLG
Subjt:  EDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHHHDHGSHGIHGAGYMDGYGLG

Sequences

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CDS sequence

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ATGAATAGACTTACAATTGTGTTTGTGGAACTGGAGATAGCTGAGAGTTGGGAAGAGATGCTCAACTGCTCAACACTTCGAGCCTCAGCTAGCAAATGTTTATATTGTCT
CCTTATCGAGGCCCAGTCACTTGATTCCACATTTCGCTCACCATCTTTGATAATCTATTTCTTCAACTTGCTGGAAGATGTAGCCGATGTCGTAGCTGACAGTATAGCTC
AGTTCGTATCCTCATTACCCCCCACGGTTAGAAAAACTGCTGAAGAGCCTACTCCTGAACACATTCAGAAAGTTTTCGATGAATCAGGGAATAGCGACCACCACCACCAC
CACGATCATGGCAGCCATGGCATTCATGGAGCTGGCTACATGGACGGATATGGGCTCGGTAGTCATGCCTGGAAGGACGTCCTAACGCCCACCTTTGTTCCCGCTTTCAT
CCTCTCCGACACCGGCGTGCCTCTCACCCCTCCGGTGGTAGCAGTTTTGCGGCGCAGCTCTTCTTCTAAGACCCACGGCACGGCAGTGAAACCTACTCCGGGGAACTACG
TGGCGGCACGATTGCCTCTTGCGCCATCTCCCTGA

mRNA sequence

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Protein sequence

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MNRLTIVFVELEIAESWEEMLNCSTLRASASKCLYCLLIEAQSLDSTFRSPSLIIYFFNLLEDVADVVADSIAQFVSSLPPTVRKTAEEPTPEHIQKVFDESGNSDHHHH
HDHGSHGIHGAGYMDGYGLGSHAWKDVLTPTFVPAFILSDTGVPLTPPVVAVLRRSSSSKTHGTAVKPTPGNYVAARLPLAPSP

Lsi06G001290 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome