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Lsi06G001650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G001650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor IIIB 60 kDa subunit
Genome locationchr06:1776455..1777100
RNA-Seq ExpressionLsi06G001650
SyntenyLsi06G001650
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0070897 - transcription preinitiation complex assembly (biological process)
GO:0000126 - transcription factor TFIIIB complex (cellular component)
GO:0000995 - RNA polymerase III general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659918.1 transcription factor IIIB 60 kDa subunit isoform X2 [Cucumis sativus]1.7e-2084.51Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDG--DGTYGSGLYYENMEETYNYEQDYGYDEYD
        AG EPS KKK EEQAEET+KT+NTTKEFETTEEQ++DYD   DGTYGSGLYYENMEETYN+EQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDG--DGTYGSGLYYENMEETYNYEQDYGYDEYD

XP_038880112.1 transcription factor IIIB 70 kDa subunit-like isoform X1 [Benincasa hispida]1.2e-2191.3Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        AGTEPSTKKKREEQAEETDK QNTTKEFE TE+QDDD DGDGTY SGLYYENMEE YNYEQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD

XP_038880113.1 transcription factor IIIB 70 kDa subunit-like isoform X2 [Benincasa hispida]1.2e-2191.3Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        AGTEPSTKKKREEQAEETDK QNTTKEFE TE+QDDD DGDGTY SGLYYENMEE YNYEQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD

XP_038880114.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida]1.2e-2191.3Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        AGTEPSTKKKREEQAEETDK QNTTKEFE TE+QDDD DGDGTY SGLYYENMEE YNYEQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD

XP_038880116.1 transcription factor IIIB 90 kDa subunit-like isoform X4 [Benincasa hispida]1.2e-2191.3Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        AGTEPSTKKKREEQAEETDK QNTTKEFE TE+QDDD DGDGTY SGLYYENMEE YNYEQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD

TrEMBL top hitse value%identityAlignment
A0A0A0LZ47 Uncharacterized protein8.4e-2184.51Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDG--DGTYGSGLYYENMEETYNYEQDYGYDEYD
        AG EPS KKK EEQAEET+KT+NTTKEFETTEEQ++DYD   DGTYGSGLYYENMEETYN+EQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDG--DGTYGSGLYYENMEETYNYEQDYGYDEYD

A0A1S3BQV3 transcription factor IIIB 60 kDa subunit1.4e-2088.73Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQN-TTKEFETTEEQDDDY-DGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        AG EPSTKKK EEQAEETDK +N TTKEFETTEEQDDDY DG GTYGSGLYYENMEETYN+EQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQN-TTKEFETTEEQDDDY-DGDGTYGSGLYYENMEETYNYEQDYGYDEYD

A0A5D3CEB6 Transcription factor IIIB 60 kDa subunit1.4e-2088.73Show/hide
Query:  AGTEPSTKKKREEQAEETDKTQN-TTKEFETTEEQDDDY-DGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        AG EPSTKKK EEQAEETDK +N TTKEFETTEEQDDDY DG GTYGSGLYYENMEETYN+EQDYGYDEYD
Subjt:  AGTEPSTKKKREEQAEETDKTQN-TTKEFETTEEQDDDY-DGDGTYGSGLYYENMEETYNYEQDYGYDEYD

A0A6J1F4S8 transcription factor IIIB 60 kDa subunit-like5.1e-1874.32Show/hide
Query:  GTEPSTKKKREEQAEETDKTQNTTKEFETTE------EQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        GTEP +KKKREEQ  +TDK QN TKEFE+TE      EQ+DDYDG+GTYGSGLYYENM+E  NYEQDYGYDEYD
Subjt:  GTEPSTKKKREEQAEETDKTQNTTKEFETTE------EQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD

A0A6J1HZP4 transcription factor IIIB 90 kDa subunit-like1.1e-1772.97Show/hide
Query:  GTEPSTKKKREEQAEETDKTQNTTKEFETTE------EQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD
        GTEP +KKKREEQ  +TDK QN TKE+E+TE      EQ+DDYDG+GTYGSGLYYENM+E  NYEQDYGYDEYD
Subjt:  GTEPSTKKKREEQAEETDKTQNTTKEFETTE------EQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCGCCGGTACAGAGCCTTCGACGAAAAAGAAACGTGAAGAACAGGCTGAAGAGACTGACAAGACACAAAATACAACTAAAGAATTTGAAACCACAGAGGAGCA
GGATGATGATTATGATGGTGATGGAACATATGGTTCTGGTCTTTATTATGAGAATATGGAAGAAACATACAACTACGAACAAGATTATGGCTATGATGAATACGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCGCCGGTACAGAGCCTTCGACGAAAAAGAAACGTGAAGAACAGGCTGAAGAGACTGACAAGACACAAAATACAACTAAAGAATTTGAAACCACAGAGGAGCA
GGATGATGATTATGATGGTGATGGAACATATGGTTCTGGTCTTTATTATGAGAATATGGAAGAAACATACAACTACGAACAAGATTATGGCTATGATGAATACGATTGAT
TACACGATATCTTCGGCGATTCTTATTCAGCTGTTCGAGATTACGAGCTAGTGTTTGCTGTCAATAGTTAGCCGATCTTATTAGATGAACATTAAGCATGCGATTTGAAT
CACATCTGAGCTTTCTGTGCTTATTTCATAAAGTTTTGCAAGGAAAATAGATTAGTTAACACAGCTTCCATATTCAAAGGATTTATGGATAATTTTTTTCTTTACTAAAA
GACCATGAAGATAAAGCATACACCCATGTGGAAGAATATGGAATCGATAAATCTCGATTAAAATAAGGTCATGTTTACTCACTGGGAATCAAAATAAAAATTAACAAAAT
AAAATCAATCGGAACAGTGATAGACTATAGAGAGTAGAG
Protein sequenceShow/hide protein sequence
MDFAGTEPSTKKKREEQAEETDKTQNTTKEFETTEEQDDDYDGDGTYGSGLYYENMEETYNYEQDYGYDEYD