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Lsi06G001670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G001670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr06:1811255..1847763
RNA-Seq ExpressionLsi06G001670
SyntenyLsi06G001670
Gene Ontology termsGO:0050832 - defense response to fungus (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR022618 - Defensin-like protein 20-27


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653392.1 hypothetical protein Csa_007412 [Cucumis sativus]1.3e-2663.16Show/hide
Query:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKV---------TGSLNTSAQLCCNNHPELGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVG
        +GSLNT+AQLCC NHPE GACKPGVDD  DG+           G+LN +A +CCNN+P LG+CKPGVDD  Q +GKCW  C SGC KGGFCK+VG
Subjt:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKV---------TGSLNTSAQLCCNNHPELGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVG

KGN66136.1 hypothetical protein Csa_007074 [Cucumis sativus]1.9e-1768.97Show/hide
Query:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC
        +GS+NT+AQLCCNNHPELG C+ GVDD  DGKCW HCI+GCEKGGFCK +  K+   C
Subjt:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC

KGN66555.2 hypothetical protein Csa_007514 [Cucumis sativus]3.5e-3248.15Show/hide
Query:  MVEIRRRFIHCLMFEFPSQIIHQTAPFPLGNNNVVFPLPFYLLYDH-ESISFPIYIAQLLSSCNIDSDVSEIIAGEIALLVNEATDKNPNESFHIVAVVD
        ++EI+RR  H LMF FP QIIHQT P  L  +N  FPL F   + + E  SF  Y+AQL SS NI+S  SE +A  I L+ N+  ++N N SFHI  ++D
Subjt:  MVEIRRRFIHCLMFEFPSQIIHQTAPFPLGNNNVVFPLPFYLLYDH-ESISFPIYIAQLLSSCNIDSDVSEIIAGEIALLVNEATDKNPNESFHIVAVVD

Query:  YVKYTWMEPLSIPTQQPTSNMVRMEKLEEIGEDLGDCCICLERFC-CNEEKVVKIPSGHTQH
        ++ +TWM PLS  T+Q T N V M + ++IG DLGDC ICL+     N E V+KI  GH  H
Subjt:  YVKYTWMEPLSIPTQQPTSNMVRMEKLEEIGEDLGDCCICLERFC-CNEEKVVKIPSGHTQH

TYK10190.1 putative defensin-like protein 20 [Cucumis melo var. makuwa]1.7e-1872.41Show/hide
Query:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC
        +GS NT+AQLCCNNHPELG+C+PGVDD  DGKCW HCI+GCEKGGFCKQ+  K+   C
Subjt:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC

TYK10191.1 putative defensin-like protein 20 [Cucumis melo var. makuwa]5.1e-3161.74Show/hide
Query:  LQRQGKAIGISKEKVTGSLN-TSAQLCCNNHPELGACKPGVDDQ--GDGK-----VTG-SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEK
        + R+GK  G  K    GSLN  +AQ+CCNNHP LG CKPGVDD   G+GK     ++G S NT+AQLCCNNHPELG+C+PGVDD  DGKCW HCI+GCEK
Subjt:  LQRQGKAIGISKEKVTGSLN-TSAQLCCNNHPELGACKPGVDDQ--GDGK-----VTG-SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEK

Query:  GGFCKQVGSKHWICC
        GGFCKQ+ +K+   C
Subjt:  GGFCKQVGSKHWICC

TrEMBL top hitse value%identityAlignment
A0A0A0LW68 RING-type domain-containing protein1.7e-3248.15Show/hide
Query:  MVEIRRRFIHCLMFEFPSQIIHQTAPFPLGNNNVVFPLPFYLLYDH-ESISFPIYIAQLLSSCNIDSDVSEIIAGEIALLVNEATDKNPNESFHIVAVVD
        ++EI+RR  H LMF FP QIIHQT P  L  +N  FPL F   + + E  SF  Y+AQL SS NI+S  SE +A  I L+ N+  ++N N SFHI  ++D
Subjt:  MVEIRRRFIHCLMFEFPSQIIHQTAPFPLGNNNVVFPLPFYLLYDH-ESISFPIYIAQLLSSCNIDSDVSEIIAGEIALLVNEATDKNPNESFHIVAVVD

Query:  YVKYTWMEPLSIPTQQPTSNMVRMEKLEEIGEDLGDCCICLERFC-CNEEKVVKIPSGHTQH
        ++ +TWM PLS  T+Q T N V M + ++IG DLGDC ICL+     N E V+KI  GH  H
Subjt:  YVKYTWMEPLSIPTQQPTSNMVRMEKLEEIGEDLGDCCICLERFC-CNEEKVVKIPSGHTQH

A0A0A0LYL5 Uncharacterized protein9.1e-1872.41Show/hide
Query:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC
        +GSLNT+AQLCC NHPE GACKPGVDD  DG+CW  CI GCEKGG CK+VG KH   C
Subjt:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC

A0A0A0M1N0 Uncharacterized protein9.1e-1868.97Show/hide
Query:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC
        +GS+NT+AQLCCNNHPELG C+ GVDD  DGKCW HCI+GCEKGGFCK +  K+   C
Subjt:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC

A0A5D3CEJ1 Putative defensin-like protein 202.5e-3161.74Show/hide
Query:  LQRQGKAIGISKEKVTGSLN-TSAQLCCNNHPELGACKPGVDDQ--GDGK-----VTG-SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEK
        + R+GK  G  K    GSLN  +AQ+CCNNHP LG CKPGVDD   G+GK     ++G S NT+AQLCCNNHPELG+C+PGVDD  DGKCW HCI+GCEK
Subjt:  LQRQGKAIGISKEKVTGSLN-TSAQLCCNNHPELGACKPGVDDQ--GDGK-----VTG-SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEK

Query:  GGFCKQVGSKHWICC
        GGFCKQ+ +K+   C
Subjt:  GGFCKQVGSKHWICC

A0A5D3CFQ3 Putative defensin-like protein 208.2e-1972.41Show/hide
Query:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC
        +GS NT+AQLCCNNHPELG+C+PGVDD  DGKCW HCI+GCEKGGFCKQ+  K+   C
Subjt:  TGSLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICC

SwissProt top hitse value%identityAlignment
P0CAX9 Defensin-like protein 213.6e-1153.45Show/hide
Query:  LCCNNHPELGACKPGVDDQGD--GKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG
        +CC  HP +G C P +DD  +  GKCW  CI GCE GGFCK  G KH IC  H N  G
Subjt:  LCCNNHPELGACKPGVDDQGD--GKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG

Q2V2S1 Putative defensin-like protein 202.1e-1155.17Show/hide
Query:  LCCNNHPELGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG
        +CC  HP +G C PG+DD  + DGKCW  CI GCE GGFCK    KH IC  H N  G
Subjt:  LCCNNHPELGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG

Q2V391 Defensin-like protein 227.7e-0640Show/hide
Query:  SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCE--KGGFCKQV---GSKHWIC
        ++     LCCNNHP+ G C    DDQ   +C + C++GC+  KGG+CK +   G  H  C
Subjt:  SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCE--KGGFCKQV---GSKHWIC

Arabidopsis top hitse value%identityAlignment
AT4G14276.1 Defensin-like (DEFL) family protein2.5e-1253.45Show/hide
Query:  LCCNNHPELGACKPGVDDQGD--GKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG
        +CC  HP +G C P +DD  +  GKCW  CI GCE GGFCK  G KH IC  H N  G
Subjt:  LCCNNHPELGACKPGVDDQGD--GKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG

AT5G08055.1 Defensin-like (DEFL) family protein2.5e-0436.67Show/hide
Query:  SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGC--EKGGFCKQV---GSKHWIC
        ++ +   LCCNNHP+ G C    D+Q   +C   C +GC   KG +CK +   G  H  C
Subjt:  SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGC--EKGGFCKQV---GSKHWIC

AT5G08315.1 Defensin-like (DEFL) family protein5.5e-0740Show/hide
Query:  SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCE--KGGFCKQV---GSKHWIC
        ++     LCCNNHP+ G C    DDQ   +C + C++GC+  KGG+CK +   G  H  C
Subjt:  SLNTSAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCE--KGGFCKQV---GSKHWIC

AT5G52605.1 Defensin-like (DEFL) family protein1.5e-1255.17Show/hide
Query:  LCCNNHPELGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG
        +CC  HP +G C PG+DD  + DGKCW  CI GCE GGFCK    KH IC  H N  G
Subjt:  LCCNNHPELGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGAAATTCGAAGACGTTTTATCCATTGTCTCATGTTTGAATTTCCTTCTCAAATCATCCATCAAACTGCACCATTTCCACTCGGCAATAATAATGTTGTTTTTCC
TCTCCCTTTCTATCTTCTCTATGACCATGAATCAATTTCCTTCCCCATCTACATCGCCCAATTGCTTTCCTCTTGCAACATCGACTCCGACGTTTCCGAAATCATTGCTG
GGGAAATCGCCCTCCTCGTCAACGAAGCCACCGACAAAAATCCAAATGAGAGTTTCCACATTGTTGCCGTTGTCGACTATGTCAAATACACCTGGATGGAACCATTATCG
ATCCCAACGCAGCAGCCGACGAGCAACATGGTGAGGATGGAGAAGTTGGAGGAGATTGGAGAAGACTTGGGAGATTGTTGTATTTGTTTGGAGAGATTTTGTTGTAATGA
GGAGAAGGTGGTAAAGATCCCCAGTGGACATACTCAGCATTTAGAGAGCGATACCACCCTGCAAAGGCAGGGGAAAGCTATAGGCATCAGCAAAGAAAAAGTTACAGGGA
GTTTGAATACAAGTGCTCAATTGTGTTGCAACAACCATCCTGAGTTGGGCGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAAGTTACAGGGAGTTTGAATACA
AGTGCTCAATTGTGTTGCAACAACCATCCTGAGTTGGGCGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGAAAGTGTTGGACACACTGCATTTCTGGTTGTGAGAA
AGGAGGATTCTGTAAACAAGTCGGGAGTAAACATTGGATATGTTGTTTGCACTTAAATGAGAAGGGTCAAAAGAGTCCACCTCTCCAACACCATTGTCTACTTCTTGTCT
TTGGAAGGAATGAAACCAAGCTACTGAAAAAGTTACCCGTAAACTTGGATCTTCCTCTACGTCGCGTTGCAGCGAGATGCCAGAGCGGAAGTGCTCGGTGTTCGGTAGCA
AGTAGAAGCCAATTGTTGCCTGCTCAAGATACAAAAGTTTCACCTCTTGGCCATCCTTCTCCAGCCCTTTGGCATAAGCCAATTGCCAATCTTGGACAAGATCTAAACCA
GCCACCACAACAAGGCTTTTCGGGAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGAAATTCGAAGACGTTTTATCCATTGTCTCATGTTTGAATTTCCTTCTCAAATCATCCATCAAACTGCACCATTTCCACTCGGCAATAATAATGTTGTTTTTCC
TCTCCCTTTCTATCTTCTCTATGACCATGAATCAATTTCCTTCCCCATCTACATCGCCCAATTGCTTTCCTCTTGCAACATCGACTCCGACGTTTCCGAAATCATTGCTG
GGGAAATCGCCCTCCTCGTCAACGAAGCCACCGACAAAAATCCAAATGAGAGTTTCCACATTGTTGCCGTTGTCGACTATGTCAAATACACCTGGATGGAACCATTATCG
ATCCCAACGCAGCAGCCGACGAGCAACATGGTGAGGATGGAGAAGTTGGAGGAGATTGGAGAAGACTTGGGAGATTGTTGTATTTGTTTGGAGAGATTTTGTTGTAATGA
GGAGAAGGTGGTAAAGATCCCCAGTGGACATACTCAGCATTTAGAGAGCGATACCACCCTGCAAAGGCAGGGGAAAGCTATAGGCATCAGCAAAGAAAAAGTTACAGGGA
GTTTGAATACAAGTGCTCAATTGTGTTGCAACAACCATCCTGAGTTGGGCGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAAGTTACAGGGAGTTTGAATACA
AGTGCTCAATTGTGTTGCAACAACCATCCTGAGTTGGGCGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGAAAGTGTTGGACACACTGCATTTCTGGTTGTGAGAA
AGGAGGATTCTGTAAACAAGTCGGGAGTAAACATTGGATATGTTGTTTGCACTTAAATGAGAAGGGTCAAAAGAGTCCACCTCTCCAACACCATTGTCTACTTCTTGTCT
TTGGAAGGAATGAAACCAAGCTACTGAAAAAGTTACCCGTAAACTTGGATCTTCCTCTACGTCGCGTTGCAGCGAGATGCCAGAGCGGAAGTGCTCGGTGTTCGGTAGCA
AGTAGAAGCCAATTGTTGCCTGCTCAAGATACAAAAGTTTCACCTCTTGGCCATCCTTCTCCAGCCCTTTGGCATAAGCCAATTGCCAATCTTGGACAAGATCTAAACCA
GCCACCACAACAAGGCTTTTCGGGAACTTGA
Protein sequenceShow/hide protein sequence
MVEIRRRFIHCLMFEFPSQIIHQTAPFPLGNNNVVFPLPFYLLYDHESISFPIYIAQLLSSCNIDSDVSEIIAGEIALLVNEATDKNPNESFHIVAVVDYVKYTWMEPLS
IPTQQPTSNMVRMEKLEEIGEDLGDCCICLERFCCNEEKVVKIPSGHTQHLESDTTLQRQGKAIGISKEKVTGSLNTSAQLCCNNHPELGACKPGVDDQGDGKVTGSLNT
SAQLCCNNHPELGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSKHWICCLHLNEKGQKSPPLQHHCLLLVFGRNETKLLKKLPVNLDLPLRRVAARCQSGSARCSVA
SRSQLLPAQDTKVSPLGHPSPALWHKPIANLGQDLNQPPQQGFSGT