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Lsi06G001990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G001990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr06:2165788..2178302
RNA-Seq ExpressionLsi06G001990
SyntenyLsi06G001990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON80026.1 hypothetical protein PanWU01x14_004760 [Parasponia andersonii]3.3e-0829.52Show/hide
Query:  QKAINNQILNLTLNVTIFPQNPLLLKPNFLKNSLRRSILHRHKRLQSHNIREASKHFRNSNSQCLGRNSSTPIVSRHSISNIRLAPI-LTRPWINRDKPN
        +KAI+N I  L       PQN    KPNFLKN LRR +LH H RLQ   +R   K+          R+   P+V    + ++R  P+  +    + D  +
Subjt:  QKAINNQILNLTLNVTIFPQNPLLLKPNFLKNSLRRSILHRHKRLQSHNIREASKHFRNSNSQCLGRNSSTPIVSRHSISNIRLAPI-LTRPWINRDKPN

Query:  RTTIDTNRPAPRMWNTNIPDESHSLFLGSENSPSNELHDTIVPSPKHEIINIGELEWTESELSEFH
        R +++ +RP P +   +  +  H L       P+ E    +   P+H ++++GE+E  E +  E H
Subjt:  RTTIDTNRPAPRMWNTNIPDESHSLFLGSENSPSNELHDTIVPSPKHEIINIGELEWTESELSEFH
TrEMBL top hitse value%identityAlignment
A0A2P5E3A3 Uncharacterized protein1.6e-0829.52Show/hide
Query:  QKAINNQILNLTLNVTIFPQNPLLLKPNFLKNSLRRSILHRHKRLQSHNIREASKHFRNSNSQCLGRNSSTPIVSRHSISNIRLAPI-LTRPWINRDKPN
        +KAI+N I  L       PQN    KPNFLKN LRR +LH H RLQ   +R   K+          R+   P+V    + ++R  P+  +    + D  +
Subjt:  QKAINNQILNLTLNVTIFPQNPLLLKPNFLKNSLRRSILHRHKRLQSHNIREASKHFRNSNSQCLGRNSSTPIVSRHSISNIRLAPI-LTRPWINRDKPN

Query:  RTTIDTNRPAPRMWNTNIPDESHSLFLGSENSPSNELHDTIVPSPKHEIINIGELEWTESELSEFH
        R +++ +RP P +   +  +  H L       P+ E    +   P+H ++++GE+E  E +  E H
Subjt:  RTTIDTNRPAPRMWNTNIPDESHSLFLGSENSPSNELHDTIVPSPKHEIINIGELEWTESELSEFH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACATTACATTCATTTCCAACTTTGCAAATGTGTATTGTATTAATAACGGCTTGAGACCCTTGAACCCTAGAATCGGCAGGCACAGGGGATCATTGAGAAAGTC
CCACATCGGAGAAACTCGCAGCAGGGACCTGACGAAGCGCTTTAAATACAATACAATGGTTGACTTTAAAACATACTTACCTGGACGGGGTCAATGGGCGATCAACAAGA
CTCATGGCCTAGTGGGGGCCTGCGTTCGCGCGGCCCCTTCTAATGCACCAGTTTCAATTGTTACACTTTCCAGAGGACAGAAAGCTATAAACAATCAAATCCTTAATCTC
ACCCTTAATGTAACAATATTTCCTCAAAATCCCCTCCTTCTGAAACCCAACTTTCTCAAGAACTCTTTGAGACGCTCTATTCTCCACAGACACAAACGCCTGCAATCTCA
CAACATCAGGGAAGCTTCGAAACACTTCAGGAACAGCAATTCTCAATGCCTCGGTCGCAATTCCTCGACCCCAATAGTCTCTCGCCACAGCATATCCAACATCCGCCTTG
CACCGATCCTCACCCGACCATGGATAAACCGAGACAAACCCAACAGAACGACCATCGACACAAATCGACCGGCGCCAAGGATGTGGAATACAAACATCCCTGATGAAAGC
CATAGCCTGTTCCTTGGAAGTGAAAACAGTCCATCTAATGAACTTCATGACACGATCGTCCCCAGCCCAAAGCATGAAATCATCAACATCGGAGAGTTGGAATGGACGGA
GAGTGAGTTGAGTGAGTTCCATTATTGGTTGTTATTTCGACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAACATTACATTCATTTCCAACTTTGCAAATGTGTATTGTATTAATAACGGCTTGAGACCCTTGAACCCTAGAATCGGCAGGCACAGGGGATCATTGAGAAAGTC
CCACATCGGAGAAACTCGCAGCAGGGACCTGACGAAGCGCTTTAAATACAATACAATGGTTGACTTTAAAACATACTTACCTGGACGGGGTCAATGGGCGATCAACAAGA
CTCATGGCCTAGTGGGGGCCTGCGTTCGCGCGGCCCCTTCTAATGCACCAGTTTCAATTGTTACACTTTCCAGAGGACAGAAAGCTATAAACAATCAAATCCTTAATCTC
ACCCTTAATGTAACAATATTTCCTCAAAATCCCCTCCTTCTGAAACCCAACTTTCTCAAGAACTCTTTGAGACGCTCTATTCTCCACAGACACAAACGCCTGCAATCTCA
CAACATCAGGGAAGCTTCGAAACACTTCAGGAACAGCAATTCTCAATGCCTCGGTCGCAATTCCTCGACCCCAATAGTCTCTCGCCACAGCATATCCAACATCCGCCTTG
CACCGATCCTCACCCGACCATGGATAAACCGAGACAAACCCAACAGAACGACCATCGACACAAATCGACCGGCGCCAAGGATGTGGAATACAAACATCCCTGATGAAAGC
CATAGCCTGTTCCTTGGAAGTGAAAACAGTCCATCTAATGAACTTCATGACACGATCGTCCCCAGCCCAAAGCATGAAATCATCAACATCGGAGAGTTGGAATGGACGGA
GAGTGAGTTGAGTGAGTTCCATTATTGGTTGTTATTTCGACCTTAA
Protein sequenceShow/hide protein sequence
MANITFISNFANVYCINNGLRPLNPRIGRHRGSLRKSHIGETRSRDLTKRFKYNTMVDFKTYLPGRGQWAINKTHGLVGACVRAAPSNAPVSIVTLSRGQKAINNQILNL
TLNVTIFPQNPLLLKPNFLKNSLRRSILHRHKRLQSHNIREASKHFRNSNSQCLGRNSSTPIVSRHSISNIRLAPILTRPWINRDKPNRTTIDTNRPAPRMWNTNIPDES
HSLFLGSENSPSNELHDTIVPSPKHEIINIGELEWTESELSEFHYWLLFRP