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Lsi06G002360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G002360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAP complex subunit sigma
Genome locationchr06:2723998..2726685
RNA-Seq ExpressionLsi06G002360
SyntenyLsi06G002360
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3486115.1 AP-4 complex subunit sigma isoform X2 [Gossypium australe]1.7e-3390.48Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDM
        MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE   + V++
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDM

KAF9615763.1 hypothetical protein IFM89_026229 [Coptis chinensis]2.7e-3491.46Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEV
        MGIRFIL+VNKQGQTRLAQYYE LT+EERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEY+ +E+
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEV

MBA0633098.1 hypothetical protein [Gossypium davidsonii]1.7e-3390.48Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDM
        MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE   + V++
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDM

XP_004135683.1 AP-4 complex subunit sigma [Cucumis sativus]4.5e-34100Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

XP_012463777.1 PREDICTED: AP-4 complex subunit sigma isoform X2 [Gossypium raimondii]1.7e-3390.48Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDM
        MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE   + V++
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDM

TrEMBL top hitse value%identityAlignment
A0A0A0M1T6 AP complex subunit sigma2.2e-34100Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

A0A1S3BQ09 AP complex subunit sigma2.2e-34100Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

A0A5D3CFV6 AP complex subunit sigma2.2e-34100Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

A0A6J1HBI1 AP complex subunit sigma2.2e-34100Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

A0A6J1JK41 AP complex subunit sigma2.2e-34100Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

SwissProt top hitse value%identityAlignment
O82201 AP-4 complex subunit sigma1.2e-3494.74Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVYRRYASLFF+VGVD+DE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

Q3ZBB6 AP-4 complex subunit sigma-11.5e-1952.7Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+YA+LF +VGV++ E
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

Q54NZ4 AP-4 complex subunit sigma8.3e-2354.02Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDMPRN
        M I++ L+VN +G+TRL+QYYE++  EER A+E EI+RKCL+R E QCSFVE+++YK++YR+YA+LFF+VGVD  E  +  +++  N
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDMPRN

Q9WVL1 AP-4 complex subunit sigma-17.3e-1952.7Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        I+F LMVNKQGQTRL++YYE++ + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+YA+LF +VGV++ E
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

Q9Y587 AP-4 complex subunit sigma-11.5e-1952.7Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+YA+LF +VGV++ E
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein6.1e-1350.7Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD
        IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRRYA LFF V VD
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD

AT2G17380.1 associated protein 195.2e-1240.24Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD--NDEYTVIEV
        I F+L+V++QG+ RL ++Y   T +ER  +  E+    L R  + C+F+E R YK+VY+RYASL+F + +D  ++E  V+E+
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD--NDEYTVIEV

AT2G19790.1 SNARE-like superfamily protein8.8e-3694.74Show/hide
Query:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE
        MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVYRRYASLFF+VGVD+DE
Subjt:  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDE

AT4G35410.1 Clathrin adaptor complex small chain family protein1.5e-1140.24Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD--NDEYTVIEV
        I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+RYASL+F + +D  ++E  V+E+
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD--NDEYTVIEV

AT4G35410.2 Clathrin adaptor complex small chain family protein1.5e-1140.24Show/hide
Query:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD--NDEYTVIEV
        I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+RYASL+F + +D  ++E  V+E+
Subjt:  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVD--NDEYTVIEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATCAGATTCATTCTGATGGTGAACAAGCAAGGACAAACGCGCCTTGCTCAGTATTATGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGT
TCGCAAATGCCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTAGTTGGAGTTGACA
ATGATGAATATACCGTCATAGAAGTTGATATGCCTCGTAACCAGAAGAGTTTGTAG
mRNA sequenceShow/hide mRNA sequence
CTCGAGGACTAAAGTGTTCATTTTGAAACTTCAAGGACCAAATAGACATCAAGTTCAAACCTCGGGGACTAAAAGTGCATTTTGCCCTAATAATAATAATAGAAAATTAA
TTAAATAAACAAATCCGGAGATGTCTACCTCTTGGTCTTGGCGATCGATTTAGGCTTTTTCTGGCGGGTGTGAGCTTCGTGGAGTTTGTGAAGAGCAGAATGGGGATCAG
ATTCATTCTGATGGTGAACAAGCAAGGACAAACGCGCCTTGCTCAGTATTATGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCC
TCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTAGTTGGAGTTGACAATGATGAATAT
ACCGTCATAGAAGTTGATATGCCTCGTAACCAGAAGAGTTTGTAG
Protein sequenceShow/hide protein sequence
MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDMPRNQKSL