CuGenDBv2

Gene ID	Lsi06G002380
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S30
Genome location	chr06:2737060..2750602
RNA-Seq Expression	Lsi06G002380
Synteny	Lsi06G002380
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006914 - autophagy (biological process) GO:0015031 - protein transport (biological process) GO:0055085 - transmembrane transport (biological process) GO:0048208 - COPII vesicle coating (biological process) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000139 - Golgi membrane (cellular component) GO:0070971 - endoplasmic reticulum exit site (cellular component) GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function) GO:0022857 - transmembrane transporter activity (molecular function) GO:0020037 - heme binding (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR044730 - Ribonuclease H-like domain, plant type IPR036397 - Ribonuclease H superfamily IPR012337 - Ribonuclease H-like superfamily IPR006846 - Ribosomal protein S30 IPR002156 - Ribonuclease H domain

Homology

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GenBank top hits

e value

%identity

Alignment

CAF2137490.1 unnamed protein product [Brassica napus]

4.9e-24

78.75

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Query:  LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        L   F++ D+ +C+  L   KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

EEE65180.1 hypothetical protein OsJ_20291 [Oryza sativa Japonica Group]

8.4e-24

92.42

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Query:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        + +F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KHN42697.1 Protein transport protein Sec16B [Glycine soja]

8.4e-24

89.86

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Query:  KCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        K I  + + KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  KCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KYP55364.1 40S ribosomal protein S30 [Cajanus cajan]

6.5e-24

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Query:  LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        + + ++  + L  IE   L KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

XP_015889175.2 uncharacterized protein LOC107424007 [Ziziphus jujuba]

2.2e-24

92.42

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Query:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        +F+ + KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

TrEMBL top hits

e value

%identity

Alignment

A0A151SKI7 Protein transport protein sec16

3.1e-24

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Query:  LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        + + ++  + L  IE   L KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A151TJD2 40S ribosomal protein S30

5.3e-24

96.83

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Query:  FLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  FLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A6P4A6S7 40S ribosomal protein S30

1.1e-24

92.42

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Query:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        +F+ + KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

B9FRR9 40S ribosomal protein S30

4.1e-24

92.42

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Query:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        + +F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

I1J9W0 40S ribosomal protein S30

5.3e-24

96.83

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Query:  FLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  FLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hits

e value

%identity

Alignment

P49689 40S ribosomal protein S30

2.7e-25

96.67

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S30

5.5e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S30

5.5e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S30

5.5e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S30

5.5e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hits

e value

%identity

Alignment

AT2G19750.1 Ribosomal protein S30 family protein

1.9e-26

96.67

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein

1.9e-26

96.67

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein

1.9e-26

96.67

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Sequences

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CDS sequence

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mRNA sequence

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ATGGTTCTTGGTCAGCCAATTGCTCCAATTGAAGCTCGTGTAGATTGGGAAGAGAGAAATTATGCAGCTGTGGGAAGAGATCGGTGGTCTCCTCCAGCTGTTAGAAGTTT
TAAACTAAATATTGATGCTGCTTGTTGTCCGACGTCGAACAAAGTGGGGTTAGGGGCGATCATCTGCGACTCATCTGGGGTGGTGGTGGTTGTTTCATCTCATTTCCTCC
CTTATCGGTTGGAGTCCTTTGCGGCAGAGGCTTTGGCCCTTCTTCATGGATTGAAGCTGGTTCGACAATTAGAGTTGGTGAATGTTCATGTTGAAGCTGATGCTAAAGCG
CTTGTCAAAGTCATTTATGAGAATAGTATGAAATGCTCTCCTCATGGTGCAATTTTAAATGAAATTAGCGGCTTGTCATCGGAAGTTAAGCACCAGGAAAGTACCGAAGC
AATCAATCTGCCATGGGTGAGCAAAACCCTAACTCTTGATTTCCGGACCTCCGATGTTCTGAAGTGCATTGAGTTTCTTTTCCTTTGGAAAGTACACGGATCTCTGGCTC
GTGCCGGCAAGGTTAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACC
GCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAATAGCGAACTCATGGGGGGAGCTTTGCCGCTGGAGAGGCATGGTTTTTTCTAGGC
GTCGATCGGGTATCAACACAGAAAATGCTGGAAAGGATCTTTGCTTTTTAGGGCGTTGCAGCCACAAGTTTAAAGTGGAAGAACAAGAACCTGTATTAGACGACGGTGCT
GTTGAAGAATCTTTGCAGCTCCTAAAAGCATAGCAACATGAGCATCATGGCCACACGCATGCATCTTTCCAGGAACTTTGCTTTTGTGTTCCCATTCTACACCCTCCTAC
ATTACAACCAACATTACACAAATAATTTCTCTCAATAAAGGGGCATTTATACAACAATGGATGAAATCCATTGAGAACAAATAGCCCTCATTCCTCAGTTTCAAAATCAT
CCATATAACTATTGGATTTCATAATCACATTCAAACAAAAGAAACAGAAAGAAAGACAGAGATTCAAAAAATTTAGGATATTAAGTGTACCTGCAGGGCTAGAGCATCCA
TGTCTGCTCGAATAGCAACGAAAGGAGGGTTTCCAGTTCCGATGAAACCAAC

Protein sequence

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MVLGQPIAPIEARVDWEERNYAAVGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKA
LVKVIYENSMKCSPHGAILNEISGLSSEVKHQESTEAINLPWVSKTLTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVT
AVVGFGKKRGPNSSEK

Lsi06G002380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome