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Lsi06G002440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G002440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor RAX2-like
Genome locationchr06:2767705..2772106
RNA-Seq ExpressionLsi06G002440
SyntenyLsi06G002440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653405.1 hypothetical protein Csa_007455 [Cucumis sativus]2.0e-3966.45Show/hide
Query:  TDNDVKNHWNTKLKKKFN-SFSDPPIPTAVVADPPP-PCSATANSLKLH-DHEHNIINTNF--IFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSS
        TDNDVKNHWNTKLKKKFN SFS PP P  VV DPP    ++TANSLKLH DHEHN INTNF    S PPFD         Q PMLNNNNN  I ELSTSS
Subjt:  TDNDVKNHWNTKLKKKFN-SFSDPPIPTAVVADPPP-PCSATANSLKLH-DHEHNIINTNF--IFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSS

Query:  SSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYD---QYPYEDDLMEGFDVN
        SSISLPI+Q HL+FS  G  S + A+ILQSY+HG+Y+   QYPYEDD+M+GFDV+
Subjt:  SSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYD---QYPYEDDLMEGFDVN

XP_004135811.1 LOW QUALITY PROTEIN: transcription factor RAX2 [Cucumis sativus]2.0e-3966.45Show/hide
Query:  TDNDVKNHWNTKLKKKFN-SFSDPPIPTAVVADPPP-PCSATANSLKLH-DHEHNIINTNF--IFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSS
        TDNDVKNHWNTKLKKKFN SFS PP P  VV DPP    ++TANSLKLH DHEHN INTNF    S PPFD         Q PMLNNNNN  I ELSTSS
Subjt:  TDNDVKNHWNTKLKKKFN-SFSDPPIPTAVVADPPP-PCSATANSLKLH-DHEHNIINTNF--IFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSS

Query:  SSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYD---QYPYEDDLMEGFDVN
        SSISLPI+Q HL+FS  G  S + A+ILQSY+HG+Y+   QYPYEDD+M+GFDV+
Subjt:  SSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYD---QYPYEDDLMEGFDVN

XP_008450812.1 PREDICTED: transcription factor RAX2-like [Cucumis melo]2.6e-3464.1Show/hide
Query:  TDNDVKNHWNTKLKKKF-NSFSDPPIPTAVVADPPPPCSATANSLKL--HDHEHNI-INTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSSS
        TDNDVKNHWNTKLKKKF NS S+PP  T +V DP    S TANSLK+  +DHEHNI  N N   S P FD         Q PMLNNNNN  I ELSTSSS
Subjt:  TDNDVKNHWNTKLKKKF-NSFSDPPIPTAVVADPPPPCSATANSLKL--HDHEHNI-INTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSSS

Query:  SISLP-IDQTHL-QFSGNGGGSSDDAE-ILQSYYHGLYD--QYPYEDDLMEGFDVN
        SISLP I+Q HL +FSG G   SD+AE ILQSY+HG+YD  QYPYEDD+MEGF V+
Subjt:  SISLP-IDQTHL-QFSGNGGGSSDDAE-ILQSYYHGLYD--QYPYEDDLMEGFDVN

XP_022933833.1 transcription factor MYB36-like [Cucurbita moschata]6.2e-2048.41Show/hide
Query:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADP------------PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI
        TDNDVKNHWNTKLKKKFNSFS+ P PT   A               PP SA A+ ++L +     ++ N +F+   FD KH  +P+ QFPML N      
Subjt:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADP------------PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI

Query:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD
         ELSTSSS+ SLPI+Q  L F GN G      E L SY  G Y QYPY  D+MEG D
Subjt:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD

XP_023530624.1 transcription factor MYB36-like [Cucurbita pepo subsp. pepo]3.6e-2049.04Show/hide
Query:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADP------------PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI
        TDNDVKNHWNTKLKKKFNSFS+ P PT   A               PP SA A+ L+L +     ++ N +F+   FD KH  +P+ QFPML N      
Subjt:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADP------------PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI

Query:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD
         ELSTSSS+ SLPI+Q  L F GN G      E L SY  G Y QYPY  D+MEG D
Subjt:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD

TrEMBL top hitse value%identityAlignment
A0A0A0LZB2 Uncharacterized protein9.9e-4066.45Show/hide
Query:  TDNDVKNHWNTKLKKKFN-SFSDPPIPTAVVADPPP-PCSATANSLKLH-DHEHNIINTNF--IFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSS
        TDNDVKNHWNTKLKKKFN SFS PP P  VV DPP    ++TANSLKLH DHEHN INTNF    S PPFD         Q PMLNNNNN  I ELSTSS
Subjt:  TDNDVKNHWNTKLKKKFN-SFSDPPIPTAVVADPPP-PCSATANSLKLH-DHEHNIINTNF--IFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSS

Query:  SSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYD---QYPYEDDLMEGFDVN
        SSISLPI+Q HL+FS  G  S + A+ILQSY+HG+Y+   QYPYEDD+M+GFDV+
Subjt:  SSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYD---QYPYEDDLMEGFDVN

A0A1S3BPH8 transcription factor RAX2-like1.3e-3464.1Show/hide
Query:  TDNDVKNHWNTKLKKKF-NSFSDPPIPTAVVADPPPPCSATANSLKL--HDHEHNI-INTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSSS
        TDNDVKNHWNTKLKKKF NS S+PP  T +V DP    S TANSLK+  +DHEHNI  N N   S P FD         Q PMLNNNNN  I ELSTSSS
Subjt:  TDNDVKNHWNTKLKKKF-NSFSDPPIPTAVVADPPPPCSATANSLKL--HDHEHNI-INTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSSS

Query:  SISLP-IDQTHL-QFSGNGGGSSDDAE-ILQSYYHGLYD--QYPYEDDLMEGFDVN
        SISLP I+Q HL +FSG G   SD+AE ILQSY+HG+YD  QYPYEDD+MEGF V+
Subjt:  SISLP-IDQTHL-QFSGNGGGSSDDAE-ILQSYYHGLYD--QYPYEDDLMEGFDVN

A0A6J1CVC2 transcription factor RAX2-like6.5e-1545.86Show/hide
Query:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADPPPPCSATANSLKLHDHEHNII---------NTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISEL
        TDNDVKNHWNTKLKKKFNS S+ P PT   A       A A +   H+   +I          N N +FS P      NF+PQ +FP +   +  P +E 
Subjt:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADPPPPCSATANSLKLHDHEHNII---------NTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISEL

Query:  STSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEG-FDVN
                    QT + FSGNGGG SDD EIL SY  G Y QYPYED L EG FDV+
Subjt:  STSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEG-FDVN

A0A6J1F5Y4 transcription factor MYB36-like3.0e-2048.41Show/hide
Query:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADP------------PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI
        TDNDVKNHWNTKLKKKFNSFS+ P PT   A               PP SA A+ ++L +     ++ N +F+   FD KH  +P+ QFPML N      
Subjt:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADP------------PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI

Query:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD
         ELSTSSS+ SLPI+Q  L F GN G      E L SY  G Y QYPY  D+MEG D
Subjt:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD

A0A6J1KT76 transcription factor RAX3-like8.1e-1846.5Show/hide
Query:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAV----------VADP--PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI
        TDNDVKNHWNTKLKKKFNSFS+   PT            +A P   PP SA A+ L+  +     ++ N +F+   FD KH  +P+ QFPML N      
Subjt:  TDNDVKNHWNTKLKKKFNSFSDPPIPTAV----------VADP--PPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPI

Query:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD
         ELSTSSS+ SLP++Q  + F GN      D E + SY  G Y QYPY  D+MEG D
Subjt:  SELSTSSSSISLPIDQTHLQFSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAACGGATAACGATGTGAAAAACCACTGGAATACCAAGTTGAAGAAGAAGTTCAATTCATTTTCCGACCCACCAATTCCCACCGCCGTTGTCGCCGACCCACCACC
CCCGTGTTCCGCCACTGCAAATTCCTTAAAACTCCATGATCATGAACACAACATTATCAACACCAACTTTATATTTTCAGGTCCTCCTTTTGATTTAAAACATAATTTCG
AACCCCAATATCAATTCCCCATGTTGAATAATAATAACAATAATCCAATATCAGAATTATCCACTTCCTCATCTTCAATTTCACTCCCCATTGACCAAACCCACCTCCAA
TTTTCCGGCAACGGCGGCGGAAGCTCCGATGACGCCGAAATCCTTCAAAGTTATTACCATGGGCTTTATGATCAATACCCATATGAAGATGATCTTATGGAAGGATTTGA
TGTTAATTTATGCGCACTTCGACTAATCTCACGTGACAACCTACTTCACCCTACACCATTTGGATGTCAAAAAATCCATAAGATATTAAATCTTAGACTAATAACGGCAT
TATATGAGTATAATCATGTTGACTTTTATGGACTGGCTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAACGGATAACGATGTGAAAAACCACTGGAATACCAAGTTGAAGAAGAAGTTCAATTCATTTTCCGACCCACCAATTCCCACCGCCGTTGTCGCCGACCCACCACC
CCCGTGTTCCGCCACTGCAAATTCCTTAAAACTCCATGATCATGAACACAACATTATCAACACCAACTTTATATTTTCAGGTCCTCCTTTTGATTTAAAACATAATTTCG
AACCCCAATATCAATTCCCCATGTTGAATAATAATAACAATAATCCAATATCAGAATTATCCACTTCCTCATCTTCAATTTCACTCCCCATTGACCAAACCCACCTCCAA
TTTTCCGGCAACGGCGGCGGAAGCTCCGATGACGCCGAAATCCTTCAAAGTTATTACCATGGGCTTTATGATCAATACCCATATGAAGATGATCTTATGGAAGGATTTGA
TGTTAATTTATGCGCACTTCGACTAATCTCACGTGACAACCTACTTCACCCTACACCATTTGGATGTCAAAAAATCCATAAGATATTAAATCTTAGACTAATAACGGCAT
TATATGAGTATAATCATGTTGACTTTTATGGACTGGCTGCCTAA
Protein sequenceShow/hide protein sequence
MLTDNDVKNHWNTKLKKKFNSFSDPPIPTAVVADPPPPCSATANSLKLHDHEHNIINTNFIFSGPPFDLKHNFEPQYQFPMLNNNNNNPISELSTSSSSISLPIDQTHLQ
FSGNGGGSSDDAEILQSYYHGLYDQYPYEDDLMEGFDVNLCALRLISRDNLLHPTPFGCQKIHKILNLRLITALYEYNHVDFYGLAA