; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G002450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G002450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor RAX2-like
Genome locationchr06:2772995..2775401
RNA-Seq ExpressionLsi06G002450
SyntenyLsi06G002450
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10125.1 transcription factor RAX2-like [Cucumis melo var. makuwa]2.0e-4697.73Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGS
        MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWI LP KAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGS
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGS

XP_004135811.1 LOW QUALITY PROTEIN: transcription factor RAX2 [Cucumis sativus]5.3e-4797.75Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWI LP KAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

XP_008450812.1 PREDICTED: transcription factor RAX2-like [Cucumis melo]5.3e-4797.75Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWI LP KAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

XP_022933833.1 transcription factor MYB36-like [Cucurbita moschata]4.2e-4491.01Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VKRGPWSPQEDATL AFIHKHGT GNWI LPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFT EEDN+IC+LYST+GSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

XP_023530624.1 transcription factor MYB36-like [Cucurbita pepo subsp. pepo]1.4e-4491.11Show/hide
Query:  SMGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        SMGRAPCCDKA+VKRGPWSPQEDATL AFIHKHGT GNWI LPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFT EEDN+IC+LYST+GSR
Subjt:  SMGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

TrEMBL top hitse value%identityAlignment
A0A0A0LZB2 Uncharacterized protein2.6e-4797.75Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWI LP KAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

A0A1S3BPH8 transcription factor RAX2-like2.6e-4797.75Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWI LP KAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

A0A5D3CF12 Transcription factor RAX2-like9.7e-4797.73Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGS
        MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWI LP KAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGS
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGS

A0A6J1F5Y4 transcription factor MYB36-like2.0e-4491.01Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VKRGPWSPQEDATL AFIHKHGT GNWI LPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFT EEDN+IC+LYST+GSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

A0A6J1KT76 transcription factor RAX3-like2.0e-4491.01Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VKRGPWSPQEDATL AFIHKHGT GNWI LPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFT EEDN+IC+LYST+GSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

SwissProt top hitse value%identityAlignment
F4JSU0 Transcription factor MYB875.5e-3974.16Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDK +VK+GPWS +EDA L ++I KHGTG NWI+LP++ G+ RCGKSCRLRWLNYLRP++KHGGFT EED +ICSLY TIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

Q9FG68 Transcription factor RAX11.1e-3671.91Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDK  VKRGPWSP+ED+ L  +I K+G GGNWI+ P KAGL RCGKSCRLRWLNYLRP+IKHG F++EED +I SL++ IGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

Q9FKL2 Transcription factor MYB361.6e-3875.28Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VK+GPWSP+ED  L  +I K+GTGGNWI LP+K GL RCGKSCRLRWLNYLRP+IKHGGF++EED +I SLY +IGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

Q9M2Y9 Transcription factor RAX32.2e-4077.53Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VK+GPWSP+EDA L ++I   GTGGNWI LP+K GL RCGKSCRLRWLNYLRP+IKHGGF++EE+N+ICSLY TIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

Q9SJL7 Transcription factor RAX21.9e-3977.53Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VKRGPWSP+EDA L  +I K GTGGNWI LP KAGL RCGKSCRLRWLNYLRP+I+HG FT+EEDN+I SL+++IGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

Arabidopsis top hitse value%identityAlignment
AT2G36890.1 Duplicated homeodomain-like superfamily protein1.3e-4077.53Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VKRGPWSP+EDA L  +I K GTGGNWI LP KAGL RCGKSCRLRWLNYLRP+I+HG FT+EEDN+I SL+++IGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

AT3G49690.1 myb domain protein 841.6e-4177.53Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VK+GPWSP+EDA L ++I   GTGGNWI LP+K GL RCGKSCRLRWLNYLRP+IKHGGF++EE+N+ICSLY TIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

AT4G37780.1 myb domain protein 873.9e-4074.16Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDK +VK+GPWS +EDA L ++I KHGTG NWI+LP++ G+ RCGKSCRLRWLNYLRP++KHGGFT EED +ICSLY TIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

AT5G57620.1 myb domain protein 361.1e-3975.28Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VK+GPWSP+ED  L  +I K+GTGGNWI LP+K GL RCGKSCRLRWLNYLRP+IKHGGF++EED +I SLY +IGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR

AT5G65790.1 myb domain protein 682.7e-4177.53Show/hide
Query:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR
        MGRAPCCDKA+VK+GPWSP+EDA L  +I   GTGGNWI LP+K GL RCGKSCRLRWLNYLRP+IKHGGF++EEDN+IC+LY TIGSR
Subjt:  MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCCATGGGAAGAGCTCCTTGCTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCTCCTCAAGAAGATGCTACTCTCACTGCCTTTATTCATAAACATGGCAC
TGGTGGCAATTGGATCACTCTCCCTCGCAAAGCGGGGCTTAATCGGTGTGGGAAAAGCTGCCGGCTGAGGTGGCTGAATTATCTCCGACCAGACATCAAACACGGAGGTT
TCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACAATCGGAAGTAGGCAAGTTCTTTCTCCTTTAAAATATAGGACTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCCATGGGAAGAGCTCCTTGCTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCTCCTCAAGAAGATGCTACTCTCACTGCCTTTATTCATAAACATGGCAC
TGGTGGCAATTGGATCACTCTCCCTCGCAAAGCGGGGCTTAATCGGTGTGGGAAAAGCTGCCGGCTGAGGTGGCTGAATTATCTCCGACCAGACATCAAACACGGAGGTT
TCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACAATCGGAAGTAGGCAAGTTCTTTCTCCTTTAAAATATAGGACTTACTAA
Protein sequenceShow/hide protein sequence
MVSMGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWITLPRKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSRQVLSPLKYRTY