CuGenDBv2

Gene ID	Lsi06G002920
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S16
Genome location	chr06:3355257..3356957
RNA-Seq Expression	Lsi06G002920
Synteny	Lsi06G002920
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0006334 - nucleosome assembly (biological process) GO:0006412 - translation (biological process) GO:0005634 - nucleus (cellular component) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]

4.2e-61

81.88

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK                    YWLSVGAQPS+PVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS
        GVLPPPPMVAMARKGGPRDTRPVDPLSGRF+TPEKPTD S+ KDGNADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

XP_023516386.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]

8.7e-59

79.87

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK                    YWLSVGAQPS+PVQRILFR+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS
        GVLPPPPMVAMARKGGPRDTR VDPLSGR ++PEKPTD S+ KDGNADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

XP_023529314.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]

8.7e-59

81.33

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK                    YWLSVGAQPSDPVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNG-KDGNADS
        GVLPPPPMVAMARKGGPRD+RPVDPLSGRF TP+K TD SN  KDGNADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNG-KDGNADS

XP_038880698.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X1 [Benincasa hispida]

1.3e-67

87.92

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERV         NHS++T SHPSRYWLSVGAQPSDPVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS
        GVLPPPPMVAMARKGGPRDTR VDPLSGRF+TPEKPTD S+GKDG+ADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]

7.1e-61

82.55

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK                    YWLSVGAQPSDPVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS
        GVLPPPPMVAMARKGGPRDTR VDPLSGRF+TPEKPTD S+GKDG+ADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQ70 30S ribosomal protein S16

1.6e-58

78.67

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK                    YWLSVGAQPSDP+QRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPE-KPTDGSNGKDGNADS
        G+LPPPPMVAM RKGGPRDTRPVDPLSGRF+TPE KPTD SNG+ G+ADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPE-KPTDGSNGKDGNADS

A0A5D3CDW9 30S ribosomal protein S16

1.6e-58

78.67

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK                    YWLSVGAQPSDP+QRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPE-KPTDGSNGKDGNADS
        G+LPPPPMVAM RKGGPRDTRPVDPLSGRF+TPE KPTD SNG+ G+ADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPE-KPTDGSNGKDGNADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial

2.0e-61

81.88

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK                    YWLSVGAQPS+PVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS
        GVLPPPPMVAMARKGGPRDTRPVDPLSGRF+TPEKPTD S+ KDGNADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like

5.5e-59

81.33

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK                    YWLSVGAQPSDPVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN-GKDGNADS
        GVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TD SN  KDGNADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN-GKDGNADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like

5.5e-59

81.33

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK                    YWLSVGAQPSDPVQRILFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN-GKDGNADS
        GVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TD SN  KDG+ADS
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN-GKDGNADS

SwissProt top hits

e value

%identity

Alignment

A8LMC0 30S ribosomal protein S16

3.3e-16

44.23

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV                    +YWL  GA+P+D V R+L  A
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLP
         VLP
Subjt:  GVLP

O65686 30S ribosomal protein S16-1, chloroplastic

1.8e-27

45.45

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+K                    YWLSVGAQP+D V+ +LFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDT-RPVDPLSGRFI
        G++PP PMV +  K G + T + V P++G  +
Subjt:  GVLPPPPMVAMARKGGPRDT-RPVDPLSGRFI

Q16AN8 30S ribosomal protein S16

4.3e-16

44.12

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV                    +YWL  GAQP+D V R+L  A
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GV
        G+
Subjt:  GV

Q5LNF2 30S ribosomal protein S16

3.3e-16

44.66

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV                    +YWLS GAQ +D V R+L  A
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVL
        GV+
Subjt:  GVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial

2.4e-51

69.5

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K                    YWLSVGAQPSDPVQR+LFR+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN
        G+LPPPPMVAM RKGG RDTRPVDP++GR++  E  T  +N
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

1.3e-28

45.45

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+K                    YWLSVGAQP+D V+ +LFRA
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDT-RPVDPLSGRFI
        G++PP PMV +  K G + T + V P++G  +
Subjt:  GVLPPPPMVAMARKGGPRDT-RPVDPLSGRFI

AT5G56940.1 Ribosomal protein S16 family protein

1.7e-52

69.5

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Query:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA
        MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K                    YWLSVGAQPSDPVQR+LFR+
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRA

Query:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN
        G+LPPPPMVAM RKGG RDTRPVDP++GR++  E  T  +N
Subjt:  GVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSN

ATCG00050.1 ribosomal protein S16

7.0e-06

42.22

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Query:  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQ
        +V++RL R G K +  YR++A D RY R+G+ L  +G+Y+P+  Q
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQ

Sequences

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CDS sequence

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ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCT
AGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTACCACAACCTCGTCTTTCATACTAATCATTCACTCATCA
CTCCCTCCCATCCTTCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCA
ATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGC
TGATTCATAA

mRNA sequence

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Protein sequence

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MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVA
MARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS

Lsi06G002920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome