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Lsi06G003140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G003140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II PsbX
Genome locationchr06:3572123..3572494
RNA-Seq ExpressionLsi06G003140
SyntenyLsi06G003140
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009518 - Photosystem II PsbX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-4387.2Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLP---SSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTSAVS+ALPLT A+ K LSN AFFNPLP   SSRSRKA+AAAP SNG LVAVRSSLKEKA+ G+TAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLP---SSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGAVVVAILGAVIGVSNFDPVKR
        AAGG VVVAILGAVIGVSNFDPVKR
Subjt:  AAGGAVVVAILGAVIGVSNFDPVKR

XP_008450907.1 PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]2.7e-4588.62Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMALP T+A+ KPLSNDAFFNPLPS +SRK +AAAP SNGR+VAVRSSLKEKAVAGITAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKRS
        GAVVVAI GAVIGV+NFDPVKRS
Subjt:  GAVVVAILGAVIGVSNFDPVKRS

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]4.2e-4386.4Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLP---SSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VS+ALPLT A+ K LSN AFFNPLP   SSRSRKA+AAAP S+GRLVAVRSSLKEKA+ G+TAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLP---SSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGAVVVAILGAVIGVSNFDPVKR
        AAGG VVVAILGAVIGVSNFDPVKR
Subjt:  AAGGAVVVAILGAVIGVSNFDPVKR

XP_031735956.1 uncharacterized protein LOC116401689 [Cucumis sativus]6.5e-4485.37Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMALP T+A++KPLSNDAFFNPLPS +SRK +A AP SNGR++AVRSS KEKAVAGI+AAALTASMVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKRS
        G VVVAILGAVIGV+NFDPVKRS
Subjt:  GAVVVAILGAVIGVSNFDPVKRS

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]1.8e-4993.5Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMALPLTYA+ KPLSNDAFFNPLPS +SRKA+AAAPKSNGR+VAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKRS
        GAVVVAILGAVIGV+NFDPVKRS
Subjt:  GAVVVAILGAVIGVSNFDPVKRS

TrEMBL top hitse value%identityAlignment
A0A0A0LWL3 Uncharacterized protein3.2e-4485.37Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMALP T+A++KPLSNDAFFNPLPS +SRK +A AP SNGR++AVRSS KEKAVAGI+AAALTASMVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKRS
        G VVVAILGAVIGV+NFDPVKRS
Subjt:  GAVVVAILGAVIGVSNFDPVKRS

A0A1S3BRD2 uncharacterized protein LOC1034923561.3e-4588.62Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMALP T+A+ KPLSNDAFFNPLPS +SRK +AAAP SNGR+VAVRSSLKEKAVAGITAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKRS
        GAVVVAI GAVIGV+NFDPVKRS
Subjt:  GAVVVAILGAVIGVSNFDPVKRS

A0A6J1H8G2 uncharacterized protein LOC1114614522.0e-4386.4Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLP---SSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VS+ALPLT A+ K LSN AFFNPLP   SSRSRKA+AAAP S+GRLVAVRSSLKEKA+ G+TAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLP---SSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGAVVVAILGAVIGVSNFDPVKR
        AAGG VVVAILGAVIGVSNFDPVKR
Subjt:  AAGGAVVVAILGAVIGVSNFDPVKR

A0A6J1HV97 uncharacterized protein LOC1114677552.1e-4085.25Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MAS  AVSMALPLTYASQK LSNDAFFNPLP SRSRKA+ AAP    RLV V SSLKEKAV G+TAAAL+A+MVIPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKR
        G VV+AILGAVIGVSNFDPVKR
Subjt:  GAVVVAILGAVIGVSNFDPVKR

A0A6J1J9Y5 uncharacterized protein LOC1114848837.8e-4385.6Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPL---PSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
        MASTS VS+ALPLT A+ K LSN AFFNPL   PSSR RKA+AAAP SNGRLVAVRSSLKEKA+ G++AAALTASMVIPEVAEAAGPGVSPSLKNFLLSI
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPL---PSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSI

Query:  AAGGAVVVAILGAVIGVSNFDPVKR
        AAGG VVVAILGAVIGVSNFDPVKR
Subjt:  AAGGAVVVAILGAVIGVSNFDPVKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G06520.1 photosystem II subunit X5.5e-2555.28Show/hide
Query:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+S+  PL      P     F  PLP   S+  VA   ++  + + V++   +KA+ GI+AAALTASMVIPE+AEAAG G+SPSLKNFLLSIA+G
Subjt:  MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GAVVVAILGAVIGVSNFDPVKRS
        G V+  I+G V+GVSNFDPVKR+
Subjt:  GAVVVAILGAVIGVSNFDPVKRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAA
GGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGG
TGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCG
GTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTTCTGCAGTTTCAATGGCCTTGCCATTGACTTACGCCAGCCAAAAGCCACTCTCCAACGACGCTTTCTTCAATCCATTGCCTTCTTCTAGGTCTCGCAA
GGCCGTTGCTGCTGCTCCGAAATCCAATGGAAGGCTTGTCGCCGTCCGATCGTCGTTGAAGGAGAAGGCTGTCGCTGGAATTACGGCCGCTGCTCTGACGGCGTCGATGG
TGATTCCGGAGGTTGCAGAGGCTGCGGGACCTGGAGTGTCGCCGTCGCTGAAGAATTTCTTGCTGAGCATTGCGGCCGGTGGAGCTGTGGTGGTGGCTATATTGGGAGCG
GTCATCGGCGTCTCGAATTTCGATCCGGTGAAGCGAAGCTGA
Protein sequenceShow/hide protein sequence
MASTSAVSMALPLTYASQKPLSNDAFFNPLPSSRSRKAVAAAPKSNGRLVAVRSSLKEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGA
VIGVSNFDPVKRS