CuGenDBv2

Gene ID	Lsi06G003170
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase III subunit RPC4
Genome location	chr06:3603594..3607576
RNA-Seq Expression	Lsi06G003170
Synteny	Lsi06G003170
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK10040.1 DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo var. makuwa]

4.6e-128

80.54

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVSAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSKEYVE
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFNVSAPTQVAFGSGG+SST+RSYG+SKAGN+PRNEDGTLP+STSKEYVE
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVSAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSKEYVE

Query:  PWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQPRQKT
        PWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N SEQ+  SQ RQKT
Subjt:  PWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQPRQKT

Query:  CSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL
        CSMNELPSG                        F DF F+LTPVLK GQVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDVDSML+NIEDL
Subjt:  CSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL

XP_004144123.1 DNA-directed RNA polymerase III subunit RPC4 [Cucumis sativus]

6.5e-130

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME +PPKNKTAAPRK+KFAPKAP RR+ KPEVKAE++EDADAAQARDLLKRFN S            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE  TYDENTTT AM+LGLLEENPE DV FLQLPPMVP+IKQSS+VE MG+ NSS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ++ SQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLKNIEDL
Subjt:  DSMLKNIEDL

XP_008450913.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Cucumis melo]

1.6e-128

79.68

Show/hide

Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN S            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N S
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ+  SQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSML+NIEDL
Subjt:  DSMLKNIEDL

XP_022147557.1 DNA-directed RNA polymerase III subunit rpc4 [Momordica charantia]

3.7e-125

79.03

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKN T A RKMKFAPKAP RR+ KPEVKAEI+E+ADAAQA+DLLKRFN S            APTQVAFGSGGTS+TIRSYGI KAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLPSS SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASE  TYDE+ TTPAMDLGLLEENPET+VFFLQ+PPMVPV KQSSTVEGM AA+SS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQS+GS+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQDVAAINVEGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLK+IEDL
Subjt:  DSMLKNIEDL

XP_038878504.1 uncharacterized protein LOC120070724 [Benincasa hispida]

2.8e-133

82.26

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTAAPRK+KFAPKAP RR+ KPEVKAEI+EDADAAQARDLLKRFN S            APTQVAFGSGGTSST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE F YDENTTTPAMDLGLLEENPE DVFFLQLPPMVP++KQSSTVEG GAANS 
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQS+GSQPRQK C MNELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQDVAA+NVEGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DS+LKNIEDL
Subjt:  DSMLKNIEDL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWX7 Uncharacterized protein

3.1e-130

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME +PPKNKTAAPRK+KFAPKAP RR+ KPEVKAE++EDADAAQARDLLKRFN S            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE  TYDENTTT AM+LGLLEENPE DV FLQLPPMVP+IKQSS+VE MG+ NSS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ++ SQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAINVEGKRCCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLKNIEDL
Subjt:  DSMLKNIEDL

A0A1S3BPR1 DNA-directed RNA polymerase III subunit RPC4

7.7e-129

79.68

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN S            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N S
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ+  SQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSML+NIEDL
Subjt:  DSMLKNIEDL

A0A5A7UQN3 DNA-directed RNA polymerase III subunit RPC4

1.8e-125

77.42

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFN S            APTQVAFGSGG+SST+RSYG+SKAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLP+STSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N S
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQ+  SQ RQKTCSMNELPSGSM                        DF F+LTPVLK GQVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSML+NIEDL
Subjt:  DSMLKNIEDL

A0A5D3CFB5 DNA-directed RNA polymerase III subunit RPC4

2.2e-128

80.54

Show/hide

Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVSAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSKEYVE
        ME DPPKNKTA PRK+KFAPKAP RR+ KPEVKAE++ED DAAQARDLLKRFNVSAPTQVAFGSGG+SST+RSYG+SKAGN+PRNEDGTLP+STSKEYVE
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVSAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSKEYVE

Query:  PWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQPRQKT
        PWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASE FTYDENTTT AM+LGLLEENPETDVFFLQLPPMVP+IKQSSTVE MG+ N SEQ+  SQ RQKT
Subjt:  PWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQPRQKT

Query:  CSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL
        CSMNELPSG                        F DF F+LTPVLK GQVSSGMDCGFAQ+VAAIN+EGK CCIVGELSKRAILTPDVDSML+NIEDL
Subjt:  CSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL

A0A6J1D2P1 DNA-directed RNA polymerase III subunit rpc4

1.8e-125

79.03

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME DPPKN T A RKMKFAPKAP RR+ KPEVKAEI+E+ADAAQA+DLLKRFN S            APTQVAFGSGGTS+TIRSYGI KAGN+PRNEDG
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVS------------APTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS
        TLPSS SKEYVEPWDYYSYYPVTLPLRRPYSG+PDSLNEEEFGEASE  TYDE+ TTPAMDLGLLEENPET+VFFLQ+PPMVPV KQSSTVEGM AA+SS
Subjt:  TLPSSTSKEYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSS

Query:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV
        EQS+GS+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLG    +I +D             VSSGMDCGFAQDVAAINVEGK CCIVGELSKRAILTPDV
Subjt:  EQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDV

Query:  DSMLKNIEDL
        DSMLK+IEDL
Subjt:  DSMLKNIEDL

SwissProt top hits

e value

%identity

Alignment

P05423 DNA-directed RNA polymerase III subunit RPC4

2.6e-04

23.65

Show/hide

Query:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY
        E ++ FLQLP  +          P+  +    +G       E+ R ++  +  C++ +L  G +GKLL+ +SG V+L LG    ++  D           
Subjt:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY

Query:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML
          V+ G  C F Q++ ++ +   R     ++G +  + + +PD +S+L
Subjt:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

6.8e-05

22.67

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Query:  PRNEDGTLPSSTSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMV----------
        P+ ED  +     K   EP D      +  PLR  R   G P  ++  E                    L  L    E ++ FLQLP  +          
Subjt:  PRNEDGTLPSSTSKEYVEPWDYYSYYPVTLPLR--RPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMV----------

Query:  PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGK
        P+  +  + +G       E+ R ++  + TC++ +L  G +GKLL+ +SG V+L LG    ++  D             V+ G  C F Q++ ++ +   
Subjt:  PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGK

Query:  R---CCIVGELSKRAILTPDVDSML
        R     ++G +  + + +P+ +S+L
Subjt:  R---CCIVGELSKRAILTPDVDSML

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

2.6e-04

23.65

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Query:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY
        + ++ FLQLP  +          PV  +    +G       E+ R ++  +  C++ +L  G +GKLL+ +SG V+L LG    ++  D           
Subjt:  ETDVFFLQLPPMV----------PVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKY

Query:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML
          V+ G  C F Q++ ++ +   R     ++G +  + + +PD +S+L
Subjt:  GQVSSGMDCGFAQDVAAINVEGKR---CCIVGELSKRAILTPDVDSML

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

5.1e-32

33.75

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Query:  RKMKFAPKAPTRRL-LKPEVKAEISEDADAAQARDLLKRFNV---------SAPTQVAFGSGGTSSTIRSYGISKAGNKPRN------------------
        R+ +  P  P+RRL + P    E  ED +  +A     R  V         ++  +VAF    +   IRS+G+ K  +KP +                  
Subjt:  RKMKFAPKAPTRRL-LKPEVKAEISEDADAAQARDLLKRFNV---------SAPTQVAFGSGGTSSTIRSYGISKAGNKPRN------------------

Query:  ---EDG----TLPSSTSKEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLE-ENPETDVFFLQLPPMVPVIKQS
           EDG       + T  +YVEPWDY  SYYP  LPLR+P SG+ + L++EEFGE ++   YDENT   A +LGL   ++ +  +F  ++P  +PV+KQ 
Subjt:  ---EDG----TLPSSTSKEYVEPWDY-YSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLE-ENPETDVFFLQLPPMVPVIKQS

Query:  STVEGMGAANSSEQSRG-SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIV
         T       +  E S G S P         LP G MGK+LVY+SGAVKLK+G        D  F          VS G       DV AI+++G+ C  +
Subjt:  STVEGMGAANSSEQSRG-SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIV

Query:  GELSKRAILTPDVDSMLKNIEDL
        G  +K   +TPDV+S+L    D+
Subjt:  GELSKRAILTPDVDSMLKNIEDL

AT5G09380.1 RNA polymerase III RPC4

4.1e-50

42.17

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Query:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISED-ADAAQARDLLKRFNVSA-----------PTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG
        ME  PP       RKMKFAPKAP +R+ KPEVK E+ ED +++AQA +LL+R N  +            +QVA+  G  +ST          NK  N   
Subjt:  MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISED-ADAAQARDLLKRFNVSA-----------PTQVAFGSGGTSSTIRSYGISKAGNKPRNEDG

Query:  TLPSSTSK---EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAA
            STS    EY EPWDYYSYYP+TLP+RRPY+G+P+ L+ EEF +A     + E++   A +LGL+E++ E  +FF++L P VP+   S+  E +   
Subjt:  TLPSSTSK---EYVEPWDYYSYYPVTLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAA

Query:  NSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT
          +  +      +KT  +  LP G MGKLLVY+SGAVK+KLG    E+ +D             VS G+   FAQDV  +N E K CC+VG++ K A+LT
Subjt:  NSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILT

Query:  PDVDSMLKNIEDL
        PD+DS+LK+IE++
Subjt:  PDVDSMLKNIEDL

Sequences

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CDS sequence

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ATGGAGCACGATCCGCCCAAAAACAAGACAGCTGCTCCAAGGAAGATGAAATTTGCTCCAAAAGCACCTACTCGTCGGTTACTAAAACCTGAAGTCAAAGCAGAAATATC
AGAGGACGCTGATGCTGCTCAAGCCAGGGATTTACTAAAACGCTTCAATGTATCGGCACCTACACAAGTTGCATTTGGTTCTGGAGGTACATCAAGCACCATAAGATCAT
ATGGTATTTCAAAAGCTGGCAATAAACCAAGAAATGAAGATGGAACTCTTCCGTCTAGTACAAGCAAGGAGTATGTAGAACCATGGGATTATTACAGTTATTATCCTGTA
ACTCTTCCTTTGCGGAGACCATATTCAGGAAATCCAGATTCTCTAAACGAGGAAGAATTTGGAGAGGCTTCAGAAACCTTCACCTATGATGAAAATACAACTACTCCAGC
AATGGATCTTGGTCTACTGGAGGAGAATCCAGAGACAGACGTCTTTTTTTTACAATTACCACCTATGGTTCCTGTGATAAAGCAATCTTCTACTGTAGAAGGCATGGGGG
CAGCCAACAGCTCAGAACAAAGTAGAGGCTCACAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGTAAATTGCTTGTGTATAGGAGTGGC
GCTGTCAAGTTAAAGCTTGGGCTATTCTTAGAGGAAATCTTTTGGGATTTTGCATTCGTTCTCACACCAGTTTTAAAATACGGGCAGGTTTCTTCTGGAATGGATTGTGG
CTTTGCACAAGACGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGACTCAATGTTAAAGA
ATATTGAGGACTTATAA

mRNA sequence

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CATGGGCCCATCATGTAGGAAAAATAGACATATTTTCCAACGACAGTCATAGATCACGGGCCATCATGGTTTCCAAAACGGTCTCTCAGTTCAAAATTTTCTGAAAACTT
CCTTTCAACCTCTAAAATATATTTTGAAGATTTTCTTCCCAAACCCTACCTTCATCAACGACAATGTACGCTTCTAGATTTTCTGCATTTGAATCGGGTGAGGAGGAGTG
AGTGTTGCCGTGGGTGAAGTGTTCGAAACAGGCTGAAGCCCCGATTTTCTGCATTTTTCAGTCGCCGAACGGAAGCCCTCAATCACTGTAGAGATTTGGACAAACATTTG
ACAAGTACTAGCCATGGAGCACGATCCGCCCAAAAACAAGACAGCTGCTCCAAGGAAGATGAAATTTGCTCCAAAAGCACCTACTCGTCGGTTACTAAAACCTGAAGTCA
AAGCAGAAATATCAGAGGACGCTGATGCTGCTCAAGCCAGGGATTTACTAAAACGCTTCAATGTATCGGCACCTACACAAGTTGCATTTGGTTCTGGAGGTACATCAAGC
ACCATAAGATCATATGGTATTTCAAAAGCTGGCAATAAACCAAGAAATGAAGATGGAACTCTTCCGTCTAGTACAAGCAAGGAGTATGTAGAACCATGGGATTATTACAG
TTATTATCCTGTAACTCTTCCTTTGCGGAGACCATATTCAGGAAATCCAGATTCTCTAAACGAGGAAGAATTTGGAGAGGCTTCAGAAACCTTCACCTATGATGAAAATA
CAACTACTCCAGCAATGGATCTTGGTCTACTGGAGGAGAATCCAGAGACAGACGTCTTTTTTTTACAATTACCACCTATGGTTCCTGTGATAAAGCAATCTTCTACTGTA
GAAGGCATGGGGGCAGCCAACAGCTCAGAACAAAGTAGAGGCTCACAACCTCGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGTAAATTGCTTGT
GTATAGGAGTGGCGCTGTCAAGTTAAAGCTTGGGCTATTCTTAGAGGAAATCTTTTGGGATTTTGCATTCGTTCTCACACCAGTTTTAAAATACGGGCAGGTTTCTTCTG
GAATGGATTGTGGCTTTGCACAAGACGTTGCAGCTATCAATGTGGAAGGGAAGCGTTGCTGCATCGTTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGAC
TCAATGTTAAAGAATATTGAGGACTTATAA

Protein sequence

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MEHDPPKNKTAAPRKMKFAPKAPTRRLLKPEVKAEISEDADAAQARDLLKRFNVSAPTQVAFGSGGTSSTIRSYGISKAGNKPRNEDGTLPSSTSKEYVEPWDYYSYYPV
TLPLRRPYSGNPDSLNEEEFGEASETFTYDENTTTPAMDLGLLEENPETDVFFLQLPPMVPVIKQSSTVEGMGAANSSEQSRGSQPRQKTCSMNELPSGSMGKLLVYRSG
AVKLKLGLFLEEIFWDFAFVLTPVLKYGQVSSGMDCGFAQDVAAINVEGKRCCIVGELSKRAILTPDVDSMLKNIEDL

Lsi06G003170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome