; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G003180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G003180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTPR_REGION domain-containing protein
Genome locationchr06:3611836..3617214
RNA-Seq ExpressionLsi06G003180
SyntenyLsi06G003180
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4098047.1 unnamed protein product [Lactuca saligna]5.8e-1695.92Show/hide
Query:  KSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        +SMACVYIPVQNSEEEVRVALDQLPRDA+DILDILKAEQAPLDLWLIIA
Subjt:  KSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
KAA0055788.1 Tetratricopeptide TPR-1 [Cucumis melo var. makuwa]5.8e-1697.92Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA+
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
KAG6590030.1 Protein CTR9-like protein, partial [Cucurbita argyrosperma subsp. sororia]7.6e-2484.51Show/hide
Query:  FSGERFWAFFPSSACPALAFRRKSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        F     W FFPSSACPALA   KSMACVYIPVQNSEEEVRV LDQLP+DASDILDILKAEQAPLDLWLIIA
Subjt:  FSGERFWAFFPSSACPALAFRRKSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
TYK10039.1 Binding isoform 4 [Cucumis melo var. makuwa]5.8e-1697.92Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA+
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
VFQ76370.1 unnamed protein product [Cuscuta campestris]9.9e-16100Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
TrEMBL top hitse value%identityAlignment
A0A2H5QV77 TPR_REGION domain-containing protein4.8e-16100Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
A0A2N9ILG3 Uncharacterized protein9.7e-1769.86Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAILGFCLSIPTVCNGRLLCSDRVNNLG
        MACVYIPVQNSEEEVRVALDQLPRDA+DILDILKAEQAPLDLWLIIA  G  L +     G      R  + G
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAILGFCLSIPTVCNGRLLCSDRVNNLG
A0A5A7UL36 Tetratricopeptide TPR-12.8e-1697.92Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA+
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
A0A5D3CIG7 Binding isoform 42.8e-1697.92Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
        MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA+
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAI
A0A6S7NA39 TPR_REGION domain-containing protein2.8e-1695.92Show/hide
Query:  KSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        +SMACVYIPVQNSEEEVRVALDQLPRDA+DILDILKAEQAPLDLWLIIA
Subjt:  KSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
SwissProt top hitse value%identityAlignment
B5X0I6 Protein CTR9 homolog5.5e-1795.74Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
Arabidopsis top hitse value%identityAlignment
AT2G06210.1 binding3.9e-1895.74Show/hide
Query:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA
        MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIA
Subjt:  MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATAACCCTAAAACACCAAAATACGAATCACGAATGTGCCCTATGATCAAATTCTGTAATTCGCTTCTTTTAGAGACGGTCAGAGGCTCGAGATTTTCCGGCGA
ACGATTCTGGGCTTTCTTCCCCTCCTCCGCTTGCCCTGCTTTGGCGTTTCGAAGGAAAAGCATGGCTTGTGTGTACATACCAGTACAGAACTCGGAGGAGGAGGTCAGGG
TAGCTCTCGATCAACTCCCCAGGGACGCTTCCGACATTCTCGACATACTTAAGGCCGAGCAAGCTCCGTTAGATCTCTGGCTAATCATCGCGATTCTAGGGTTTTGTCTC
TCTATTCCAACAGTATGCAATGGTAGATTATTGTGTAGTGATAGGGTGAATAATCTAGGAAAAGATTCCCTAGGGGGAAGTTCCAACCCATCTATCATTCCAAAAGGAAG
TGGCTGCCCCAGTTCCAATAAAGCTCACAATATTGTCAAGAATCAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATAACCCTAAAACACCAAAATACGAATCACGAATGTGCCCTATGATCAAATTCTGTAATTCGCTTCTTTTAGAGACGGTCAGAGGCTCGAGATTTTCCGGCGA
ACGATTCTGGGCTTTCTTCCCCTCCTCCGCTTGCCCTGCTTTGGCGTTTCGAAGGAAAAGCATGGCTTGTGTGTACATACCAGTACAGAACTCGGAGGAGGAGGTCAGGG
TAGCTCTCGATCAACTCCCCAGGGACGCTTCCGACATTCTCGACATACTTAAGGCCGAGCAAGCTCCGTTAGATCTCTGGCTAATCATCGCGATTCTAGGGTTTTGTCTC
TCTATTCCAACAGTATGCAATGGTAGATTATTGTGTAGTGATAGGGTGAATAATCTAGGAAAAGATTCCCTAGGGGGAAGTTCCAACCCATCTATCATTCCAAAAGGAAG
TGGCTGCCCCAGTTCCAATAAAGCTCACAATATTGTCAAGAATCAA
Protein sequenceShow/hide protein sequence
MVNNPKTPKYESRMCPMIKFCNSLLLETVRGSRFSGERFWAFFPSSACPALAFRRKSMACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAILGFCL
SIPTVCNGRLLCSDRVNNLGKDSLGGSSNPSIIPKGSGCPSSNKAHNIVKNQ