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Lsi06G003240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G003240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description(1->3)-beta-glucan endohydrolase
Genome locationchr06:3653867..3654273
RNA-Seq ExpressionLsi06G003240
SyntenyLsi06G003240
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046658 - anchored component of plasma membrane (cellular component)
GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity (molecular function)
InterPro domainsIPR000490 - Glycoside hydrolase family 17
IPR017853 - Glycoside hydrolase superfamily
IPR044965 - Glycoside hydrolase family 17, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055784.1 putative glucan endo-1,3-beta-glucosidase BG5 [Cucumis melo var. makuwa]2.1e-4267.8Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG
        TKPVV DGEL Y NLFDAM+D FYAAI+KE +G+VT+ +GETGWPTCG++ +  T  I ++YN KF  HI SG GTP+KPNV+LEGFIQS+FNE++KPEG
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG

Query:  DSQCYGMFNVNMNPTYSL
        +SQC+G+F+VNMNP YSL
Subjt:  DSQCYGMFNVNMNPTYSL

KAE8653445.1 hypothetical protein Csa_006879 [Cucumis sativus]1.4e-4672.95Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD
        T PVV+D  L YYNLFDAMVD FYAAI+KE+VG+V I +GETGWPTCG D+  T AI +EYN KF  HI SGNGTP+KPNV+LEGFIQSIFNED+KPEGD
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD

Query:  SQCYGMFNVNMNPTYSLLSART
        SQCYGMF+VNM P Y L S  T
Subjt:  SQCYGMFNVNMNPTYSLLSART

XP_004144124.2 probable glucan endo-1,3-beta-glucosidase BG4 [Cucumis sativus]1.4e-4672.95Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD
        T PVV+D  L YYNLFDAMVD FYAAI+KE+VG+V I +GETGWPTCG D+  T AI +EYN KF  HI SGNGTP+KPNV+LEGFIQSIFNED+KPEGD
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD

Query:  SQCYGMFNVNMNPTYSLLSART
        SQCYGMF+VNM P Y L S  T
Subjt:  SQCYGMFNVNMNPTYSLLSART

XP_008451156.1 PREDICTED: probable glucan endo-1,3-beta-glucosidase BG5 [Cucumis melo]2.1e-4267.8Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG
        TKPVV DGEL Y NLFDAM+D FYAAI+KE +G+VT+ +GETGWPTCG++ +  T  I ++YN KF  HI SG GTP+KPNV+LEGFIQS+FNE++KPEG
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG

Query:  DSQCYGMFNVNMNPTYSL
        +SQC+G+F+VNMNP YSL
Subjt:  DSQCYGMFNVNMNPTYSL

XP_038880473.1 probable glucan endo-1,3-beta-glucosidase BG5 [Benincasa hispida]1.4e-5483.76Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD
        T+PVVRDGELNYYNLFDAMV+  YAAIDKE VGDVT+ +GETGWPTCG+D DATPAI EEYNKKF+ HICSG GTP+KPNVFLEGFIQSIFNEDEKP+GD
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD

Query:  SQCYGMFNVNMNPTYSL
        SQCYGMF++NMNP YSL
Subjt:  SQCYGMFNVNMNPTYSL

TrEMBL top hitse value%identityAlignment
A0A0A0LZ10 (1->3)-beta-glucan endohydrolase6.9e-4772.95Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD
        T PVV+D  L YYNLFDAMVD FYAAI+KE+VG+V I +GETGWPTCG D+  T AI +EYN KF  HI SGNGTP+KPNV+LEGFIQSIFNED+KPEGD
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD

Query:  SQCYGMFNVNMNPTYSLLSART
        SQCYGMF+VNM P Y L S  T
Subjt:  SQCYGMFNVNMNPTYSLLSART

A0A1S3BQX5 (1->3)-beta-glucan endohydrolase1.0e-4267.8Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG
        TKPVV DGEL Y NLFDAM+D FYAAI+KE +G+VT+ +GETGWPTCG++ +  T  I ++YN KF  HI SG GTP+KPNV+LEGFIQS+FNE++KPEG
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG

Query:  DSQCYGMFNVNMNPTYSL
        +SQC+G+F+VNMNP YSL
Subjt:  DSQCYGMFNVNMNPTYSL

A0A5A7UKS6 (1->3)-beta-glucan endohydrolase1.0e-4267.8Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG
        TKPVV DGEL Y NLFDAM+D FYAAI+KE +G+VT+ +GETGWPTCG++ +  T  I ++YN KF  HI SG GTP+KPNV+LEGFIQS+FNE++KPEG
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVD-ATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEG

Query:  DSQCYGMFNVNMNPTYSL
        +SQC+G+F+VNMNP YSL
Subjt:  DSQCYGMFNVNMNPTYSL

A0A6J1C4V7 (1->3)-beta-glucan endohydrolase4.5e-3865.22Show/hide
Query:  PVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQ
        PVV DG L+Y NLFDAMVD FYAA+DK  VGDV +A+GETGWPTCGN   ATP     YNK F  HI SG GTPK+PNV + GFI+S+FNE++ PEG+SQ
Subjt:  PVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQ

Query:  CYGMFNVNMNPTYSL
        CYG+FNV+  P Y L
Subjt:  CYGMFNVNMNPTYSL

A0A6J1HVR6 (1->3)-beta-glucan endohydrolase1.8e-3967.26Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        +VRDG L+Y NLFD MVD FYAAIDKE VGDV I IGETGWPTCGN    TP +  EYN+ F  HI SG GTP+K N+++EGFI+SIFNE++KPEG+S+C
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVNMNPTYS
        YGMFNV+  P YS
Subjt:  YGMFNVNMNPTYS

SwissProt top hitse value%identityAlignment
O22317 Glucan endo-1,3-beta-glucosidase6.2e-2137.72Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VV+DG  +Y NLFDA+VD  +AA+++    +V + + E+GWP+ G   +A+ +    YN+  +RH+  G GTP++P   +E +I  +FNE++K  G  Q 
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVNMNPTYSL
        +G+F  N  P Y +
Subjt:  YGMFNVNMNPTYSL

O49352 Probable glucan endo-1,3-beta-glucosidase BG49.0e-2847.83Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VV+DG L Y N+FDA+ D F  A++KE V ++ + + ETGWP+ GN    TPAI   YN+ F++HI SG GTPK+PN  + GF+ + FNE++KP G  Q 
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFN-VNMNPTYSL
        +G++N  +M P Y L
Subjt:  YGMFN-VNMNPTYSL

O49353 Probable glucan endo-1,3-beta-glucosidase BG54.0e-2848.7Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VV+DG L Y N+FDA+ D F  A++KE V D+ + + ETGWP+ GN    TP I   YN+ F++HI SG GTPK+PN  ++GF+ + FNE++KP G  Q 
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVN-MNPTYSL
        +G++N N M P Y+L
Subjt:  YGMFNVN-MNPTYSL

P12257 Lichenase-2 (Fragment)2.9e-1841.23Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VVRDG   Y NLFD  VD FY A+ K     V + + E+GWP+ G    ATPA    YN+  + H+  G GTP+ P   +E +I ++FNE++K  G  Q 
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVNMNPTYSL
        +G+F  NM   Y +
Subjt:  YGMFNVNMNPTYSL

Q02439 Putative glucan endo-1,3-beta-glucosidase GVI (Fragment)5.5e-1737.5Show/hide
Query:  VRDGELNYYNLFDAMVDTFYAAIDKELVGD-VTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        V D  + Y N+FDA++D  YAA++K   G+ + + + ETGWP+ G    A+      Y    +RH+    GTP++P   +E +I ++FNE++KPEG  Q 
Subjt:  VRDGELNYYNLFDAMVDTFYAAIDKELVGD-VTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVNMNPTY
        +GMF  +M+  Y
Subjt:  YGMFNVNMNPTY

Arabidopsis top hitse value%identityAlignment
AT1G33220.1 Glycosyl hydrolase superfamily protein4.3e-2545.61Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VV+DG L Y N+FDA+ D F  A++KE V D+ + + ETGWP+ GN    TP I   YN+ F++HI SG GTPK+PN  ++GF+ + FNE++KP G    
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVNMNPTYSL
              +M P Y L
Subjt:  YGMFNVNMNPTYSL

AT1G77780.1 Glycosyl hydrolase superfamily protein2.3e-2341.46Show/hide
Query:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD
        T PVV DG+  Y N+FDA +D F  A++K   G V + + ETGWPT GND   +      YN+  ++ + +G GTP++PNV +  F   +FNED K    
Subjt:  TKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGD

Query:  SQCYGMFNVNMNPTYSLLS-ART
         Q +G F+ NM P Y + + ART
Subjt:  SQCYGMFNVNMNPTYSLLS-ART

AT5G20330.1 beta-1,3-glucanase 46.4e-2947.83Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VV+DG L Y N+FDA+ D F  A++KE V ++ + + ETGWP+ GN    TPAI   YN+ F++HI SG GTPK+PN  + GF+ + FNE++KP G  Q 
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFN-VNMNPTYSL
        +G++N  +M P Y L
Subjt:  YGMFN-VNMNPTYSL

AT5G20340.1 beta-1,3-glucanase 52.9e-2948.7Show/hide
Query:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC
        VV+DG L Y N+FDA+ D F  A++KE V D+ + + ETGWP+ GN    TP I   YN+ F++HI SG GTPK+PN  ++GF+ + FNE++KP G  Q 
Subjt:  VVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQC

Query:  YGMFNVN-MNPTYSL
        +G++N N M P Y+L
Subjt:  YGMFNVN-MNPTYSL

AT5G20390.1 Glycosyl hydrolase superfamily protein2.3e-2644.44Show/hide
Query:  KPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDS
        K VV+DG L Y N+FD + D F  A++KE V D+ + + ETGWP+ GN    TP I   YN  F++H+ SG GTPK+P   + GF+ + FNE++KP G  
Subjt:  KPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDS

Query:  QCYGMFN-VNMNPTYSL
        Q +G++N  +M P Y +
Subjt:  QCYGMFN-VNMNPTYSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGACAAAGCCAGTAGTTCGCGATGGAGAATTGAATTATTACAACTTGTTCGATGCAATGGTGGATACATTTTATGCAGCTATCGACAAAGAATTGGTTGGAGATGT
GACTATTGCAATTGGAGAAACGGGATGGCCAACTTGTGGAAACGATGTCGATGCAACGCCAGCCATCGTGGAGGAGTACAACAAGAAATTTATGCGACATATTTGCTCCG
GTAACGGGACACCAAAGAAGCCAAATGTTTTTCTTGAAGGTTTCATACAAAGTATATTCAATGAAGATGAGAAGCCTGAAGGGGACTCACAATGTTATGGGATGTTTAAT
GTCAACATGAACCCTACTTATTCATTGTTAAGTGCAAGAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGACAAAGCCAGTAGTTCGCGATGGAGAATTGAATTATTACAACTTGTTCGATGCAATGGTGGATACATTTTATGCAGCTATCGACAAAGAATTGGTTGGAGATGT
GACTATTGCAATTGGAGAAACGGGATGGCCAACTTGTGGAAACGATGTCGATGCAACGCCAGCCATCGTGGAGGAGTACAACAAGAAATTTATGCGACATATTTGCTCCG
GTAACGGGACACCAAAGAAGCCAAATGTTTTTCTTGAAGGTTTCATACAAAGTATATTCAATGAAGATGAGAAGCCTGAAGGGGACTCACAATGTTATGGGATGTTTAAT
GTCAACATGAACCCTACTTATTCATTGTTAAGTGCAAGAACATAA
Protein sequenceShow/hide protein sequence
MGTKPVVRDGELNYYNLFDAMVDTFYAAIDKELVGDVTIAIGETGWPTCGNDVDATPAIVEEYNKKFMRHICSGNGTPKKPNVFLEGFIQSIFNEDEKPEGDSQCYGMFN
VNMNPTYSLLSART