CuGenDBv2

Gene ID	Lsi06G003250
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	(1->3)-beta-glucan endohydrolase
Genome location	chr06:3655128..3655340
RNA-Seq Expression	Lsi06G003250
Synteny	Lsi06G003250
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0046658 - anchored component of plasma membrane (cellular component) GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055784.1 putative glucan endo-1,3-beta-glucosidase BG5 [Cucumis melo var. makuwa]

2.2e-28

89.86

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNKALVEEWFNTY+KPF+DDFKINYIIVGDKA+PGLDN ILPVMMSLQDLLNA+Y GQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

KAE8653445.1 hypothetical protein Csa_006879 [Cucumis sativus]

7.3e-24

81.16

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        +A NK LVEEWFNTYVK F+DDF+INYIIVGDKAIP   N ILP+MMSLQDLLNA+YLGQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

KAG7011054.1 putative glucan endo-1,3-beta-glucosidase BG5, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.3e-24

78.26

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNK LVE WFNTY+ P++DD+ INYI+VGDKAIPGLD+ ILPVM SLQDLLNAHYLG+VKLTTL+G+
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

XP_008451156.1 PREDICTED: probable glucan endo-1,3-beta-glucosidase BG5 [Cucumis melo]

2.2e-28

89.86

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNKALVEEWFNTY+KPF+DDFKINYIIVGDKA+PGLDN ILPVMMSLQDLLNA+Y GQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

XP_038880473.1 probable glucan endo-1,3-beta-glucosidase BG5 [Benincasa hispida]

2.4e-27

85.51

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNKALVEEWFNTY+KPF+++FKINY+IVGDKAIPGLD CILPVMMS QDLLNA+Y+GQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LZ10 (1->3)-beta-glucan endohydrolase

3.5e-24

81.16

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        +A NK LVEEWFNTYVK F+DDF+INYIIVGDKAIP   N ILP+MMSLQDLLNA+YLGQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

A0A1S3BQX5 (1->3)-beta-glucan endohydrolase

1.1e-28

89.86

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNKALVEEWFNTY+KPF+DDFKINYIIVGDKA+PGLDN ILPVMMSLQDLLNA+Y GQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

A0A5A7UKS6 (1->3)-beta-glucan endohydrolase

1.1e-28

89.86

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNKALVEEWFNTY+KPF+DDFKINYIIVGDKA+PGLDN ILPVMMSLQDLLNA+Y GQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

A0A6J1C4V7 (1->3)-beta-glucan endohydrolase

1.9e-22

76.81

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        M  N++ V EWFNTYV+P+I DF INYIIVG+KAIPGLD+CILPVM SLQ+LLNA YLGQVKLTTL+GY
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

A0A6J1HVR6 (1->3)-beta-glucan endohydrolase

7.9e-24

76.81

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Query:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY
        MATNK LVEEWFNTYV+P+++D+ INYI+VGDKAIPGLD+ ILPVM SLQDLLNAHY G+ KLTTL+G+
Subjt:  MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G39640.1 glycosyl hydrolase family 17 protein

5.2e-04

33.33

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Query:  NKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCIL----PVMMSLQDLLNAHYLGQVKLTT
        N A   +W    V PF    K  Y+ VG++ +   DN ++    P M SL + L A  L  +K+TT
Subjt:  NKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCIL----PVMMSLQDLLNAHYLGQVKLTT

Sequences

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CDS sequence

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ATGGCCACTAATAAAGCTCTTGTAGAAGAGTGGTTCAATACCTACGTTAAACCCTTCATTGATGATTTCAAAATCAATTACATTATTGTTGGTGATAAGGCCATCCCAGG
ACTTGACAATTGCATATTGCCAGTCATGATGTCCCTTCAAGATCTTCTCAATGCACATTATCTTGGACAAGTCAAGCTCACCACGTTGATCGGGTATGGTTAA

mRNA sequence

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Protein sequence

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MATNKALVEEWFNTYVKPFIDDFKINYIIVGDKAIPGLDNCILPVMMSLQDLLNAHYLGQVKLTTLIGYG

Lsi06G003250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome