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Lsi06G003950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G003950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNuclear polyadenylated RNA-binding protein
Genome locationchr06:4331584..4333403
RNA-Seq ExpressionLsi06G003950
SyntenyLsi06G003950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055721.1 uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa]3.8e-5189.08Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV
        MR WMCKIHCPSSF LCQP+PHIY+TGS+PLDLENS HLPSEVESVIGTSGSIVET ESKQECR   DDK QENEY IKSSLRKPSLRSGVSKEKHVKRV
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV

Query:  QWMDFSGKELVEIREFEPR
        QWMDFSGKELVEIREFE R
Subjt:  QWMDFSGKELVEIREFEPR
XP_004144070.1 uncharacterized protein LOC101217749 [Cucumis sativus]1.0e-4888.03Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRD---DKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV
        MR WMCKIHCPSSF LCQP+PHIY+TGS+PLDLENS HLPSEVESVIGTS SIVET ESKQECRD   DK QENEY IKSSLRK SLRSGVSKEKHVKRV
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRD---DKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE
XP_016901000.1 PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo]1.1e-5089.74Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV
        MR WMCKIHCPSSF LCQP+PHIY+TGS+PLDLENS HLPSEVESVIGTSGSIVET ESKQECR   DDK QENEY IKSSLRKPSLRSGVSKEKHVKRV
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE
XP_022147688.1 uncharacterized protein LOC111016556 [Momordica charantia]1.2e-4481.74Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM
        MR WMCKIHCPSSF LCQPSP I  TGSVPL LENSPHLPSEVE+VIGTS SIV+TFE KQECRDDKEQE EY IKSSLRK SL+ G  + KH K+VQWM
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM

Query:  DFSGKELVEIREFEP
        DFSGKELVEIREFEP
Subjt:  DFSGKELVEIREFEP
XP_038879679.1 uncharacterized protein LOC120071456 [Benincasa hispida]1.8e-4886.96Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM
        MR WMCKIHCPSSF LCQPSPHIY+TGSVPLDLENSPHLPSEV+SVIG S SIVETFESKQECRDDKE     VIKSSL+KPSLRS + KEKHVKRVQWM
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM

Query:  DFSGKELVEIREFEP
        DFSGKELVEIREFEP
Subjt:  DFSGKELVEIREFEP
TrEMBL top hitse value%identityAlignment
A0A0A0M2C9 Uncharacterized protein5.0e-4988.03Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRD---DKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV
        MR WMCKIHCPSSF LCQP+PHIY+TGS+PLDLENS HLPSEVESVIGTS SIVET ESKQECRD   DK QENEY IKSSLRK SLRSGVSKEKHVKRV
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRD---DKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE
A0A1S4DZ54 uncharacterized protein LOC1034924205.4e-5189.74Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV
        MR WMCKIHCPSSF LCQP+PHIY+TGS+PLDLENS HLPSEVESVIGTSGSIVET ESKQECR   DDK QENEY IKSSLRKPSLRSGVSKEKHVKRV
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV

Query:  QWMDFSGKELVEIREFE
        QWMDFSGKELVEIREFE
Subjt:  QWMDFSGKELVEIREFE
A0A5D3CDR2 Uncharacterized protein1.8e-5189.08Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV
        MR WMCKIHCPSSF LCQP+PHIY+TGS+PLDLENS HLPSEVESVIGTSGSIVET ESKQECR   DDK QENEY IKSSLRKPSLRSGVSKEKHVKRV
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECR---DDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRV

Query:  QWMDFSGKELVEIREFEPR
        QWMDFSGKELVEIREFE R
Subjt:  QWMDFSGKELVEIREFEPR
A0A6J1D1Z7 uncharacterized protein LOC1110165565.8e-4581.74Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM
        MR WMCKIHCPSSF LCQPSP I  TGSVPL LENSPHLPSEVE+VIGTS SIV+TFE KQECRDDKEQE EY IKSSLRK SL+ G  + KH K+VQWM
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM

Query:  DFSGKELVEIREFEP
        DFSGKELVEIREFEP
Subjt:  DFSGKELVEIREFEP
A0A6J1EXK0 uncharacterized protein LOC1114391839.8e-3773.68Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM
        MR WMCKIHCPSS  LCQPSPHI++TGSV LDL+NSPHLPS    VI TSGS VET E K+    DK  E+E+  KSSLRKP+ RSGVSKEKHVK VQWM
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWM

Query:  DFSGKELVEIREFE
        DFSGKEL EIREFE
Subjt:  DFSGKELVEIREFE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55475.1 unknown protein1.4e-0647.62Show/hide
Query:  ESKQECRDDKEQENEYV-----IKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFEP
        E ++E  D KE+E + V     +KSSLRK    S  ++++  K+VQW+D  GKEL EIREFEP
Subjt:  ESKQECRDDKEQENEYV-----IKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFEP
AT3G13480.1 unknown protein9.5e-1635.71Show/hide
Query:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDL---------------------ENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENE-----YV
        MR+ +CKI CPS    C+PSPHIYA+GS+ L+                      ++  H+  E   V    G + E    +    + K++E E      +
Subjt:  MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDL---------------------ENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENE-----YV

Query:  IKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE
        +KSSL+K  L S     K  K+VQW+D  GKEL EIREFE
Subjt:  IKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGATTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTCGCCTTTGCCAACCTTCCCCTCATATATATGCCACTGGATCAGTACCATTGGATTTGGAAAACTCACC
ACATTTGCCTTCAGAAGTTGAGTCAGTCATAGGAACTTCTGGTTCCATTGTTGAGACCTTTGAATCCAAGCAAGAGTGTAGAGATGACAAAGAGCAGGAGAATGAGTATG
TAATCAAGAGTAGTTTGAGGAAGCCAAGTTTGCGGTCAGGCGTTTCGAAGGAGAAGCATGTGAAAAGAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATC
AGGGAATTTGAACCTAGGAGGTATTTAGCTTTGTGGAAGTGCGAAAAAGGAAGTGATGAAACAAAATGGACTTGGGGAGGTGGAACTGCTATTGAATTTGATTCTTAA
mRNA sequenceShow/hide mRNA sequence
TAAAAGACAAGAATAATATCAAATCCAATCCACAAATAAAAGTAGAAAATTGGAAGAATAATTTGGACAGTTCTTGATAATGACTCTATCAATTCCACTAATGGGTTCAT
CTTCAGTTGGCAAAATTCCATTTCAAATCGCTTCCCATTTCTCTGCAACTTCAAGATCCCAGTTCCCCAGTTACATCAATCTATCTTCCATTCTTCAATTTGAGCAATGG
ATGATGAAATAGGGTATGGCCGCACTTTTGATTATGCCGCACGTTTTCGTTTTTCTCTGCATTAGTTAGCATTTCATAACGATGAAAAAAAGGTACATTTCATGGAGAAT
AAAAACAAGATCGAGTATGGACGAACACCCTTTTGCCCAACTTTAAAGGTTGCGTGGGACAATTCCCATTTCGTTTTCCCCTGTTGTCGAAGGAATTTTTGTGTTGAACA
GAATTTCCTCAAGGGATCAAATTAATGATTGCGTTCTGGGTTTTACTTGCCTTCCCCGATTGATCTTTCCTTGATTCTTGTTTCATAAGATTTTTTTTCAAGCTATTTCT
CTCTTCTGTGATTCCTCTCTTGTGGTAGAGGAGTTTGATTTTGTAACATTTGTTCATGTTTTGGACTGGGATTGTCTTTCTTTCTCTGGGTTTTCTTTATTTTCATTAGT
GTGGCTGATGATTTGATTAAGATTCATGCTTCTGTTGGTTATTAGTGAAATGGGCTAAGTTTAGAAGTGATAAAAAGTAGTTTAAGTAGTCAGTTTTTTTTACCTTTTTT
TTATTGATTTTTAATGAGGATTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTCGCCTTTGCCAACCTTCCCCTCATATATATGCCACTGGATCAGTACCATTGGATT
TGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATAGGAACTTCTGGTTCCATTGTTGAGACCTTTGAATCCAAGCAAGAGTGTAGAGATGACAAAGAGCAG
GAGAATGAGTATGTAATCAAGAGTAGTTTGAGGAAGCCAAGTTTGCGGTCAGGCGTTTCGAAGGAGAAGCATGTGAAAAGAGTACAATGGATGGATTTTTCAGGCAAAGA
ACTTGTTGAGATCAGGGAATTTGAACCTAGGAGGTATTTAGCTTTGTGGAAGTGCGAAAAAGGAAGTGATGAAACAAAATGGACTTGGGGAGGTGGAACTGCTATTGAAT
TTGATTCTTAA
Protein sequenceShow/hide protein sequence
MRIWMCKIHCPSSFRLCQPSPHIYATGSVPLDLENSPHLPSEVESVIGTSGSIVETFESKQECRDDKEQENEYVIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEI
REFEPRRYLALWKCEKGSDETKWTWGGGTAIEFDS