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Lsi06G004010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G004010
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein Ycf2
Genome locationchr06:4451811..4454514
RNA-Seq ExpressionLsi06G004010
SyntenyLsi06G004010
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063018.1 putative chloroplast RF21 [Cucumis melo var. makuwa]1.1e-0882.05Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        GTLL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
QIT04093.1 Ycf2 protein [Luffa aegyptiaca]4.2e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
QKN99248.1 hypothetical chloroplast RF21 [Saxifraga sinomontana]2.5e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        GTL+ SS  EKDC++FDNDRVTLFL PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
YP_009752370.1 Ycf2 protein [Bryonia marmorata]4.2e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]4.2e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
TrEMBL top hitse value%identityAlignment
A0A249RYX8 Protein Ycf22.0e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
A0A343F2F1 Protein Ycf22.0e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
A0A5A7V5X1 Putative chloroplast RF215.4e-0982.05Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        GTLL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
A0A6H0ET42 Protein Ycf22.0e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC+RFDNDRVTL L PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
A0A6M9ZXW5 Protein Ycf21.2e-0879.49Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        GTL+ SS  EKDC++FDNDRVTLFL PEP+NPLDMIQNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
SwissProt top hitse value%identityAlignment
Q09WV7 Protein Ycf26.1e-1071.79Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        GTL+ SS+ EKDC++FDNDR TL L PEP+NPLDM+QNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
Q0G9Q1 Protein Ycf28.0e-1055.93Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNGFPIKIDGK---ERNSSTDRE
        G L+ SS+ EKDC++FDNDRVTL L PEP+NPLDM+QNG    +D +   E+N S   E
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNGFPIKIDGK---ERNSSTDRE
Q2QD30 Protein Ycf22.1e-1068.89Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNGFPIKID
        G L  SS  EKDC+RFDNDRVTL L PEP+NPLDMIQNG    +D
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNGFPIKID
Q3C1N4 Protein Ycf28.0e-1071.79Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G L+ SS+ EKDC++FDNDRVTL L PEP+NPLDM+QNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
Q7Y667 Protein Ycf26.1e-1074.36Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G LL SS+ EKDC++FDNDRVTLFL  EP+NPLDM+QNG
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core2.2e-0758.97Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G L+ SS+ EKDC++FDNDRVTL    EP++PL M+Q+G
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core2.2e-0758.97Show/hide
Query:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG
        G L+ SS+ EKDC++FDNDRVTL    EP++PL M+Q+G
Subjt:  GTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACGCTCCCAAAAAATCTAGCAACTGCCAACAATGTTTCTGTGGGATATATTGAATTGTTGTTAGATGCTTCTTTATTATGCCTTACGTTAGGCACTCTGTTGAG
ATCCTCACAGATAGAAAAAGATTGCACTCGATTTGATAATGATCGAGTGACATTGTTTCTTCCGCCCGAACCCAAGAATCCCTTAGATATGATACAAAATGGATTTCCGA
TCAAGATAGATGGGAAGGAGCGAAACAGCTCGACCGATAGGGAGAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGACGCTCCCAAAAAATCTAGCAACTGCCAACAATGTTTCTGTGGGATATATTGAATTGTTGTTAGATGCTTCTTTATTATGCCTTACGTTAGGCACTCTGTTGAG
ATCCTCACAGATAGAAAAAGATTGCACTCGATTTGATAATGATCGAGTGACATTGTTTCTTCCGCCCGAACCCAAGAATCCCTTAGATATGATACAAAATGGATTTCCGA
TCAAGATAGATGGGAAGGAGCGAAACAGCTCGACCGATAGGGAGAGAAATTGA
Protein sequenceShow/hide protein sequence
MKTLPKNLATANNVSVGYIELLLDASLLCLTLGTLLRSSQIEKDCTRFDNDRVTLFLPPEPKNPLDMIQNGFPIKIDGKERNSSTDRERN