CuGenDBv2

Gene ID	Lsi06G004170
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit a, chloroplastic
Genome location	chr06:4599425..4603746
RNA-Seq Expression	Lsi06G004170
Synteny	Lsi06G004170
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ALI89416.1 AtpI, partial [Natsiatum herpeticum]

7.3e-09

94.44

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTSLAYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

CUR00518.1 atpI [Acacia anthochaera]

5.6e-09

87.18

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDIN
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL  N
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDIN

GEU90547.1 ATP synthase subunit a, chloroplastic [Tanacetum cinerariifolium]

5.6e-09

79.55

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDINRTKNR
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL      NR
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDINRTKNR

QWE50899.1 ATP synthase CF0 A subunit [Casuarina equisetifolia]

7.3e-09

94.44

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTSLAYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

QXI85908.1 ATP synthase CF0 subunit IV [Gentiana szechenyii]

7.3e-09

89.19

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Query:  LKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        LK+IQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL
Subjt:  LKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

TrEMBL top hits

e value

%identity

Alignment

A0A0K1Z6T3 ATP synthase CF0 A subunit

3.5e-09

94.44

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTSLAYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

A0A1D0BW03 ATP synthase subunit a, chloroplastic

2.7e-09

87.18

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDIN
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL  N
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDIN

A0A1D0BXK4 ATP synthase subunit a, chloroplastic

2.7e-09

87.18

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDIN
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL  N
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDIN

A0A6L2NY49 ATP synthase subunit a, chloroplastic

2.7e-09

79.55

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDINRTKNR
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL      NR
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDINRTKNR

U3RBY9 ATP synthase subunit a, chloroplastic

3.5e-09

94.44

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTSLAYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

SwissProt top hits

e value

%identity

Alignment

A4GGA9 ATP synthase subunit a, chloroplastic

1.6e-11

87.18

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Query:  FYLKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        F  KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL
Subjt:  FYLKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

A7Y3B0 ATP synthase subunit a, chloroplastic

9.6e-12

94.44

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTSLAYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

B1NWD8 ATP synthase subunit a, chloroplastic

1.6e-11

91.67

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

Q2PMT1 ATP synthase subunit a, chloroplastic

1.6e-11

91.67

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

Q8WI28 ATP synthase subunit a, chloroplastic

1.6e-11

87.18

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Query:  FYLKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        F  KIIQLPHGELAAPTNDINTT+AL LLTS+AYFYAGL
Subjt:  FYLKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00150.1 ATPase, F0 complex, subunit A protein

1.3e-11

88.89

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Query:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL
        KIIQLP GELAAPTNDINTT+AL LLTS+AYFYAGL
Subjt:  KIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGL

Sequences

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CDS sequence

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ATGGGGCGTTTTTACCTTAAAATCATACAGTTACCTCACGGAGAGTTAGCCGCACCTACAAATGATATAAATACTACTATTGCTTTAACTTTACTCACATCATTAGCATA
TTTCTATGCGGGTCTCGACATAAATCGGACAAAGAACAGAGCTTTCACATATCATGCTCAAGTAGAGAAGAGTTATAGACTTAGTAATCGAAAGGCTTTCACCGTTGCTG
CCACTGTTCCCTCCCCAACCGTGCCCACTATCCTGCAGAGGGAGCTCAAGTCGACAAACCGGGCAAGTATTATGTTGGACCAGCCAAGGAAGAATGCAATCAGTGTGATA
AATATGATTGCACGGCAACTCTTTGGCTTCAGATCCCAGCTCAAATTTTTCTTTACAGACTGGACAATGAGAGTCGGTGCCAAGGCATTGCTTGTATACAAGAGTGAGAA
GCAGGAGTTGGAACTGGTTCCCTGTGTTCATTCAAGGAAAGCTGTGCGGCTAATTCTTCCAGTCCCGTACGCTGACTAG

mRNA sequence

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Protein sequence

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MGRFYLKIIQLPHGELAAPTNDINTTIALTLLTSLAYFYAGLDINRTKNRAFTYHAQVEKSYRLSNRKAFTVAATVPSPTVPTILQRELKSTNRASIMLDQPRKNAISVI
NMIARQLFGFRSQLKFFFTDWTMRVGAKALLVYKSEKQELELVPCVHSRKAVRLILPVPYAD

Lsi06G004170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome