CuGenDBv2

Gene ID	Lsi06G004770
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Selenoprotein O
Genome location	chr06:5490876..5491573
RNA-Seq Expression	Lsi06G004770
Synteny	Lsi06G004770
Gene Ontology terms	GO:0005524 - ATP binding (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR003846 - Protein adenylyltransferase SelO

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590231.1 hypothetical protein SDJN03_15654, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-56

84.67

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Query:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS
        MSLVSHLFPKLSLLPHIS LCHG  HRLGLVRRHST LI RRPPAS+ SPPSPL GHS HGRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS
Subjt:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS

Query:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         V+H AKKKLE+LNWDNSFVRELPGDPRTD++PR+ +
Subjt:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

XP_022960705.1 uncharacterized protein LOC111461421 [Cucurbita moschata]

2.2e-55

83.94

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Query:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS
        MSLVSHLFPKLSLLPHIS LCHG  HRLGLVRRHST LI RRPPAS+ S PSPL GHS HGRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS
Subjt:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS

Query:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         V+H AKKKLE+LNWDNSFVRELPGDPRTD++PR+ +
Subjt:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

XP_022988044.1 uncharacterized protein LOC111485404 [Cucurbita maxima]

5.0e-55

83.21

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Query:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS
        MSLVSHLFPKLSLLPHIS LC+G  HRLGLVRRHST LI RRPPA++ SPPSPL GHS HGRRRVSMDSASPEVSASVDSVAEGLKNQ+LNSDDRG  GS
Subjt:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS

Query:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         V+H A+KKLE+LNWDNSFVRELPGDPRTD+IPR+ +
Subjt:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

XP_023516247.1 uncharacterized protein LOC111780158 [Cucurbita pepo subsp. pepo]

3.8e-55

82.73

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Query:  MSLVSHLFPKLSLLPHISPLCHG----HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDG
        MSLVSHLFPKLSLLPHIS LCHG    HRLGLVRRHST LI RR PAS+ SPPSPL GHS HGRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  
Subjt:  MSLVSHLFPKLSLLPHISPLCHG----HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDG

Query:  GSSVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
        GS V+H AKKKLE+LNWDNSFVRELPGDPRTD++PR+ +
Subjt:  GSSVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

XP_038878878.1 protein adenylyltransferase SelO [Benincasa hispida]

2.1e-61

91.85

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Query:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV
        MSLVSHLFPKLS+LPHIS LCHGHRLGLVRR STLLIRRRPPAS +SPPSPLAGHS HGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSD+ GDGGSSV
Subjt:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV

Query:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
        KHEAKKKLEDLNWDNSFVRELPGDPR DIIPRE +
Subjt:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXE5 Selenoprotein O

1.3e-53

82.22

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Query:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV
        MSLVSHLFPK S+  +IS LCHGHRLGLVRR STLLIRR PPAS  S PSPL  HS HGRR++SMDSASPEVSASVDSVAEGLKNQSLN+DDR DGGSS+
Subjt:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV

Query:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         H  KKKLEDLNWDNSFVRELPGDPRTDIIPRE +
Subjt:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

A0A1S3BRJ3 Selenoprotein O

1.5e-49

78.52

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Query:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV
        MSLVSHLFPK S+  +IS LCHGHRLGLV R STLLIRR  P+S  S PS L  HS H RR++SMDSASPEVSASVDSVAEGLKNQSLN+DDR DGGSS+
Subjt:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV

Query:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         H  KKKLEDLNWDNSFVRELPGDPRTDIIPRE +
Subjt:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

A0A5D3DUC9 Selenoprotein O

1.6e-51

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Query:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV
        MSLVSHLFPK S+  +IS LCHGHRLGLV R STLLIRR  P+S  S PSPL  HS HGRR++SMDSASPEVSASVDSVAEGLKNQSLN+DDR DGGSS+
Subjt:  MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSV

Query:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         H  KKKLEDLNWDNSFVRELPGDPRTDIIPRE +
Subjt:  KHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

A0A6J1H9V3 Selenoprotein O

1.1e-55

83.94

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Query:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS
        MSLVSHLFPKLSLLPHIS LCHG  HRLGLVRRHST LI RRPPAS+ S PSPL GHS HGRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS
Subjt:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS

Query:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         V+H AKKKLE+LNWDNSFVRELPGDPRTD++PR+ +
Subjt:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

A0A6J1JKI6 Selenoprotein O

2.4e-55

83.21

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Query:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS
        MSLVSHLFPKLSLLPHIS LC+G  HRLGLVRRHST LI RRPPA++ SPPSPL GHS HGRRRVSMDSASPEVSASVDSVAEGLKNQ+LNSDDRG  GS
Subjt:  MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGS

Query:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
         V+H A+KKLE+LNWDNSFVRELPGDPRTD+IPR+ +
Subjt:  SVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G13030.1 unknown protein

3.0e-13

52.78

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Query:  SMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV
        S  S +P   +S DS+A+ L+NQSL + D G        + KKKLED NWD+SFV+ELPGDPRTD+I RE +
Subjt:  SMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAV

Sequences

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CDS sequence

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ATGTCATTGGTTTCACATCTCTTCCCCAAGCTCTCGCTGCTTCCCCACATTTCTCCCCTCTGCCATGGCCACCGCCTCGGCTTAGTTCGCCGCCATTCAACTCTCCTCAT
TCGCCGCCGCCCTCCTGCCTCTCTCGTCTCTCCACCTTCACCACTCGCCGGCCACTCTCTCCACGGCCGCCGGAGAGTTTCCATGGACTCTGCTTCACCGGAGGTTTCGG
CGTCGGTCGACTCCGTGGCGGAGGGTTTGAAGAATCAGAGCTTGAACAGTGACGATCGTGGCGATGGAGGTAGTAGCGTCAAGCACGAGGCCAAAAAGAAGCTCGAAGAT
CTGAACTGGGACAATTCATTTGTCAGAGAGCTGCCTGGCGATCCCCGTACCGATATCATTCCACGAGAGGCTGTGGGGAATAATGTTTGTAATCAATTGAAAGCTCGAGT
AGGAGCTCTTTTATACGCTATAGTTTATTGGTTTTACCTTACTGCGAGTTTCGGTTACTTC

mRNA sequence

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TAAGGATGCCTTCAAAATTCAAAGTTAGAAAAACTTAAAAATAAAAAAGAAAAGAAATGAAAAAGAAGAGAAAAAAAGAAGTTAAAAAAAAAAAACAGAATGTCATTGGT
TTCACATCTCTTCCCCAAGCTCTCGCTGCTTCCCCACATTTCTCCCCTCTGCCATGGCCACCGCCTCGGCTTAGTTCGCCGCCATTCAACTCTCCTCATTCGCCGCCGCC
CTCCTGCCTCTCTCGTCTCTCCACCTTCACCACTCGCCGGCCACTCTCTCCACGGCCGCCGGAGAGTTTCCATGGACTCTGCTTCACCGGAGGTTTCGGCGTCGGTCGAC
TCCGTGGCGGAGGGTTTGAAGAATCAGAGCTTGAACAGTGACGATCGTGGCGATGGAGGTAGTAGCGTCAAGCACGAGGCCAAAAAGAAGCTCGAAGATCTGAACTGGGA
CAATTCATTTGTCAGAGAGCTGCCTGGCGATCCCCGTACCGATATCATTCCACGAGAGGCTGTGGGGAATAATGTTTGTAATCAATTGAAAGCTCGAGTAGGAGCTCTTT
TATACGCTATAGTTTATTGGTTTTACCTTACTGCGAGTTTCGGTTACTTC

Protein sequence

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MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLED
LNWDNSFVRELPGDPRTDIIPREAVGNNVCNQLKARVGALLYAIVYWFYLTASFGYF

Lsi06G004770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome