; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G005310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G005310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPolyprotein
Genome locationchr06:6550004..6550786
RNA-Seq ExpressionLsi06G005310
SyntenyLsi06G005310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051217.1 polyprotein [Cucumis melo var. makuwa]5.2e-0850Show/hide
Query:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV
        +GF+QLP+G+ PI +  RTCYKL  + F   AL+ESP GKTVFFQT        ++    VQKV+ WD+V
Subjt:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV

KAG6588193.1 hypothetical protein SDJN03_16758, partial [Cucurbita argyrosperma subsp. sororia]1.8e-0846.05Show/hide
Query:  FDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPV-GKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWP
        F+QLP+G + IVV  R CYK+ +   E   LL++P  G+T+FFQT      N     D  Q VT+W++VQLP NWP
Subjt:  FDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPV-GKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWP

KAG6590198.1 hypothetical protein SDJN03_15621, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2678.75Show/hide
Query:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHN--NDDDHDVVQKVTMWDQVQLPSNWPP
        KGFDQL KGSEPIVV+CRTCYKLNQ  F  EALLESPVGKTVFFQTQI+G  N       DVVQKVT WDQVQLPSNWPP
Subjt:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHN--NDDDHDVVQKVTMWDQVQLPSNWPP

KGN66493.1 hypothetical protein Csa_007053 [Cucumis sativus]4.2e-2662.5Show/hide
Query:  MSLFFRSCSSKKSNGDHSLEDDEYVEKGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPS
        +SLFF S ++  S           + KG D++PKGS PIVVTCRTCYKLNQN+F  EAL+ESPVGKTVFFQ +I      DDD DVVQKVTMW+QVQLPS
Subjt:  MSLFFRSCSSKKSNGDHSLEDDEYVEKGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPS

Query:  NWPP
        +WPP
Subjt:  NWPP

TYK18870.1 hypothetical protein E5676_scaffold204G00720 [Cucumis melo var. makuwa]3.3e-1878.33Show/hide
Query:  TCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWPP
        TCYKLNQNNF  EAL+ESPVGKTVFFQT+I GD++     DVVQKVTMWDQVQLPS+WPP
Subjt:  TCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWPP

TrEMBL top hitse value%identityAlignment
A0A0A0LXM3 Uncharacterized protein2.1e-2662.5Show/hide
Query:  MSLFFRSCSSKKSNGDHSLEDDEYVEKGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPS
        +SLFF S ++  S           + KG D++PKGS PIVVTCRTCYKLNQN+F  EAL+ESPVGKTVFFQ +I      DDD DVVQKVTMW+QVQLPS
Subjt:  MSLFFRSCSSKKSNGDHSLEDDEYVEKGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPS

Query:  NWPP
        +WPP
Subjt:  NWPP

A0A0A0LZS0 Uncharacterized protein2.1e-0748.57Show/hide
Query:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV
        +GF+QLP+G+ PI +  RTCYKL  +     AL+ESP GKTVFFQT      N ++     QKV+ WD+V
Subjt:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV

A0A5A7U9X3 Polyprotein2.5e-0850Show/hide
Query:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV
        +GF+QLP+G+ PI +  RTCYKL  + F   AL+ESP GKTVFFQT        ++    VQKV+ WD+V
Subjt:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV

A0A5D3D5S0 Uncharacterized protein1.6e-1878.33Show/hide
Query:  TCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWPP
        TCYKLNQNNF  EAL+ESPVGKTVFFQT+I GD++     DVVQKVTMWDQVQLPS+WPP
Subjt:  TCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWPP

A0A5D3D5V1 Polyprotein2.5e-0850Show/hide
Query:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV
        +GF+QLP+G+ PI +  RTCYKL  + F   AL+ESP GKTVFFQT        ++    VQKV+ WD+V
Subjt:  KGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTCTTTTTCAGATCTTGCAGCTCCAAGAAATCCAATGGCGATCATTCTTTAGAAGATGATGAATATGTTGAAAAAGGGTTTGACCAACTTCCTAAAGGGAGTGA
GCCAATTGTTGTTACATGTAGAACATGTTACAAGTTGAATCAAAACAACTTTGAACTAGAGGCTTTGCTTGAGAGTCCTGTTGGAAAAACAGTGTTTTTTCAGACACAGA
TTCTTGGAGATCATAATAACGATGATGATCATGATGTTGTTCAAAAAGTGACCATGTGGGACCAAGTTCAGTTGCCTTCTAATTGGCCTCCTGGATTCAAAAGATGTTCC
AAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTCTTTTTCAGATCTTGCAGCTCCAAGAAATCCAATGGCGATCATTCTTTAGAAGATGATGAATATGTTGAAAAAGGGTTTGACCAACTTCCTAAAGGGAGTGA
GCCAATTGTTGTTACATGTAGAACATGTTACAAGTTGAATCAAAACAACTTTGAACTAGAGGCTTTGCTTGAGAGTCCTGTTGGAAAAACAGTGTTTTTTCAGACACAGA
TTCTTGGAGATCATAATAACGATGATGATCATGATGTTGTTCAAAAAGTGACCATGTGGGACCAAGTTCAGTTGCCTTCTAATTGGCCTCCTGGATTCAAAAGATGTTCC
AAGTAA
Protein sequenceShow/hide protein sequence
MSLFFRSCSSKKSNGDHSLEDDEYVEKGFDQLPKGSEPIVVTCRTCYKLNQNNFELEALLESPVGKTVFFQTQILGDHNNDDDHDVVQKVTMWDQVQLPSNWPPGFKRCS
K