CuGenDBv2

Gene ID	Lsi06G005790
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	AT-hook motif nuclear-localized protein
Genome location	chr06:7657690..7682529
RNA-Seq Expression	Lsi06G005790
Synteny	Lsi06G005790
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003680 - AT DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	IPR014476 - AT-hook motif nuclear-localized protein 15-29

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023829.1 AT-hook motif nuclear-localized protein 17, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-22

72.16

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET E+ +DV   K + N  D SP  A T   ATPM  C YNA PSP DHGMPWG SSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY

XP_004139130.1 AT-hook motif nuclear-localized protein 17 [Cucumis sativus]

1.9e-34

86.6

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDD-VDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTE +DD VDM K  IN TDESPVTATTTSSATPM VC YNAPSPPDH MPW PSSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDD-VDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY

XP_008450342.1 PREDICTED: AT-hook motif nuclear-localized protein 28-like [Cucumis melo]

9.6e-34

84.54

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET-TEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET  EDD+ +DM K  IN TDESPVTATTTSSATPM VC YNAPSPPDH MPW PSSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET-TEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY

XP_023516834.1 AT-hook motif nuclear-localized protein 28-like [Cucurbita pepo subsp. pepo]

1.5e-23

71.13

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET E+ +DV   K + N  D SP  A  T + TPM  C YNA PSP DHGMPWG SSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY

XP_038880172.1 AT-hook motif nuclear-localized protein 17-like [Benincasa hispida]

9.6e-34

86.46

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET EDD+     K AINTTDESPV ATTTSSATPMAVC YNAPSPPDH MPWGPSSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXI2 AT-hook motif nuclear-localized protein

9.4e-35

86.6

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDD-VDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTE +DD VDM K  IN TDESPVTATTTSSATPM VC YNAPSPPDH MPW PSSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDD-VDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY

A0A1S3BP06 AT-hook motif nuclear-localized protein

4.6e-34

84.54

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET-TEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET  EDD+ +DM K  IN TDESPVTATTTSSATPM VC YNAPSPPDH MPW PSSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET-TEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY

A0A5A7UQT7 AT-hook motif nuclear-localized protein

4.6e-34

84.54

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET-TEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET  EDD+ +DM K  IN TDESPVTATTTSSATPM VC YNAPSPPDH MPW PSSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET-TEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSRSSY

A0A6J1H9C1 AT-hook motif nuclear-localized protein

8.2e-23

72.16

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET E+ +DV   K + N  D SP  A T   ATPM  C YNA PSP DHGMPWG SSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY

A0A6J1JLJ2 AT-hook motif nuclear-localized protein

1.0e-20

68.04

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Query:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY
        +G VFGGIVGGKVTAASLVVVVAATFINPVFHRLPSET E+++  +  K + N  D SP TA   ++ TPM  C YNA PSP D GMPWG SSRSSY
Subjt:  RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNA-PSPPDHGMPWGPSSRSSY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G49700.1 Predicted AT-hook DNA-binding family protein

6.5e-04

41.67

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Query:  NSYYRGNLVG-RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSE
        ++++  +L G +G + GG V G + +A  V V+AA+F NP +HRLP+E
Subjt:  NSYYRGNLVG-RGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSE

Sequences

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CDS sequence

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ATGCAATGCGTTGCAAGGTATAATTCCTACTATAGGGGGAATTTGGTTGGAAGAGGAGTGGTGTTCGGAGGCATAGTTGGCGGGAAAGTCACAGCAGCGAGTCTCGTGGT
GGTGGTTGCGGCGACGTTTATAAATCCAGTGTTCCATCGACTACCAAGCGAGACGACGGAGGACGACGACGATGTTGATATGACGAAATCCGCCATCAACACTACCGATG
AGTCTCCCGTCACAGCAACTACAACAAGCTCGGCAACTCCGATGGCGGTCTGCGCATACAATGCTCCATCTCCCCCGGATCATGGAATGCCATGGGGGCCGAGTTCTCGA
TCATCTTACTGA

mRNA sequence

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Protein sequence

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MQCVARYNSYYRGNLVGRGVVFGGIVGGKVTAASLVVVVAATFINPVFHRLPSETTEDDDDVDMTKSAINTTDESPVTATTTSSATPMAVCAYNAPSPPDHGMPWGPSSR
SSY

Lsi06G005790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome