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Lsi06G005930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G005930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RALF-like 9
Genome locationchr06:8118079..8119191
RNA-Seq ExpressionLsi06G005930
SyntenyLsi06G005930
Gene Ontology termsGO:0005576 - extracellular region (cellular component)
InterPro domainsIPR008801 - Rapid ALkalinization Factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650705.1 hypothetical protein Csa_010421 [Cucumis sativus]9.5e-2360Show/hide
Query:  ILLGYGITLVFIGILLVNFDMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEE----VASTSPAMSPNAE
        +++   +TLVFIGILLV+FDMI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANPYQRGC+ I+RCR GNDIID  EE     AS SP++SPN E
Subjt:  ILLGYGITLVFIGILLVNFDMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEE----VASTSPAMSPNAE

XP_022136918.1 uncharacterized protein LOC111008495 [Momordica charantia]3.7e-1966.67Show/hide
Query:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV
        G  LVFIGILLV+F MIE+TNA  YI Y  +K D+SPGCS KHP LCKL  AN YQRGCSAINRCR  +D ID  E++
Subjt:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV

XP_022159360.1 uncharacterized protein LOC111025777 [Momordica charantia]3.1e-2161.54Show/hide
Query:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV
        G   +F+GILL    MI++TNAT +I YDP++GD+SPGCS  HPELCKL  ANPY+RGC++I+RCRGG+DIID  E +
Subjt:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV

XP_022961577.1 protein RALF-like 9 [Cucurbita moschata]7.1e-1847.75Show/hide
Query:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG--GNDIIDGVEEVASTS----------------
        G  ++FI +L V+ +MIE+TNAT YI YDP+K +    CS  HP+LCK TPANPYQRGC+ I+RCRG   +DIID  EE  + +                
Subjt:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG--GNDIIDGVEEVASTS----------------

Query:  --PAMSPNAEL
          PA+SPN EL
Subjt:  --PAMSPNAEL

XP_023546462.1 protein RALF-like 9 [Cucurbita pepo subsp. pepo]5.1e-1647.22Show/hide
Query:  LVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG--GNDIIDGVEEVASTS-------------------
        ++FI +L V+ +MIE+TNAT YI YDP+K +    CS  HP+LCK  PANPYQRGC+ I+RCRG   +DIID  EE   T+                   
Subjt:  LVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG--GNDIIDGVEEVASTS-------------------

Query:  PAMSPNAE
        PA+SPN E
Subjt:  PAMSPNAE

TrEMBL top hitse value%identityAlignment
A0A0A0L8B1 Uncharacterized protein4.6e-2360Show/hide
Query:  ILLGYGITLVFIGILLVNFDMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEE----VASTSPAMSPNAE
        +++   +TLVFIGILLV+FDMI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANPYQRGC+ I+RCR GNDIID  EE     AS SP++SPN E
Subjt:  ILLGYGITLVFIGILLVNFDMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEE----VASTSPAMSPNAE

A0A6J1C8U5 uncharacterized protein LOC1110084951.8e-1966.67Show/hide
Query:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV
        G  LVFIGILLV+F MIE+TNA  YI Y  +K D+SPGCS KHP LCKL  AN YQRGCSAINRCR  +D ID  E++
Subjt:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV

A0A6J1DYH7 uncharacterized protein LOC1110257771.5e-2161.54Show/hide
Query:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV
        G   +F+GILL    MI++TNAT +I YDP++GD+SPGCS  HPELCKL  ANPY+RGC++I+RCRGG+DIID  E +
Subjt:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEV

A0A6J1FQ53 auxin-induced in root cultures protein 12-like4.3e-1348.05Show/hide
Query:  LVFIGILLVNFDMIEVTNA-TDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGND-IIDGVEEV
        LV  G L +  DM+ +TNA  + I Y+ I+ D+SPGC+ KHP LC+   ANPY+RGC+AIN+CRG    +++ VE++
Subjt:  LVFIGILLVNFDMIEVTNA-TDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGND-IIDGVEEV

A0A6J1HAJ8 protein RALF-like 93.4e-1847.75Show/hide
Query:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG--GNDIIDGVEEVASTS----------------
        G  ++FI +L V+ +MIE+TNAT YI YDP+K +    CS  HP+LCK TPANPYQRGC+ I+RCRG   +DIID  EE  + +                
Subjt:  GITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG--GNDIIDGVEEVASTS----------------

Query:  --PAMSPNAEL
          PA+SPN EL
Subjt:  --PAMSPNAEL

SwissProt top hitse value%identityAlignment
A8MQM2 Protein RALF-like 61.3e-0636.92Show/hide
Query:  ITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCR
        I + F+ ++++            YI Y+ +KGDI PGCS K+P+ C   PA  Y RGC    RC+
Subjt:  ITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCR

A8MQM7 Protein RALF-like 152.9e-0643.08Show/hide
Query:  VFIGILLVNFDMIEVT--NATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCR
        V + + L+ F  +  T   AT YI Y  +  GD +  C K HP  CK   ANPY+RGC  I RCR
Subjt:  VFIGILLVNFDMIEVT--NATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCR

A8MQP2 Protein RALF-like 296.4e-0643.08Show/hide
Query:  LVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPYQRGCSAINRCR
        + F+ IL+V    I   +A  YI Y PI+ D+  GC  + P     K TPANPY+R C+  NRCR
Subjt:  LVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPYQRGCSAINRCR

A8MR00 Protein RALF-like 361.1e-0536.36Show/hide
Query:  TLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG
        T+V    L++   ++  T   + IG   ++ D+  GC+      CK+ PANPY+ GC A  RCRGG
Subjt:  TLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG

Q3ECL0 Protein RALF-like 92.1e-0950.75Show/hide
Query:  VFIGILLVNFDMIEVT--NATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG
        V + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   ANPYQRGC  INRCRGG
Subjt:  VFIGILLVNFDMIEVT--NATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG

Arabidopsis top hitse value%identityAlignment
AT1G60625.1 RALF-like 69.2e-0836.92Show/hide
Query:  ITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCR
        I + F+ ++++            YI Y+ +KGDI PGCS K+P+ C   PA  Y RGC    RC+
Subjt:  ITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCR

AT1G61566.1 ralf-like 91.5e-1050.75Show/hide
Query:  VFIGILLVNFDMIEVT--NATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG
        V + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   ANPYQRGC  INRCRGG
Subjt:  VFIGILLVNFDMIEVT--NATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG

AT2G22055.1 RALF-like 152.1e-0743.08Show/hide
Query:  VFIGILLVNFDMIEVT--NATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCR
        V + + L+ F  +  T   AT YI Y  +  GD +  C K HP  CK   ANPY+RGC  I RCR
Subjt:  VFIGILLVNFDMIEVT--NATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCR

AT2G32885.1 Rapid alkalinization factor (RALF) family protein7.8e-0736.36Show/hide
Query:  TLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG
        T+V    L++   ++  T   + IG   ++ D+  GC+      CK+ PANPY+ GC A  RCRGG
Subjt:  TLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG

AT4G11653.1 RALF-like 294.6e-0743.08Show/hide
Query:  LVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPYQRGCSAINRCR
        + F+ IL+V    I   +A  YI Y PI+ D+  GC  + P     K TPANPY+R C+  NRCR
Subjt:  LVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPYQRGCSAINRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACAGTTCTTCCCAAAGATTTCATATTGCTTGGTTATGGAATCACACTTGTTTTTATTGGGATTCTCTTGGTTAACTTTGACATGATTGAGGTTACAAATGCAAC
AGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAGTTAACTCCTGCAAATCCATATCAAAGAGGTTGCA
GTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGAGGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCGGAACTGCATCTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACAGTTCTTCCCAAAGATTTCATATTGCTTGGTTATGGAATCACACTTGTTTTTATTGGGATTCTCTTGGTTAACTTTGACATGATTGAGGTTACAAATGCAAC
AGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAGTTAACTCCTGCAAATCCATATCAAAGAGGTTGCA
GTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGAGGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCGGAACTGCATCTTCATTAA
Protein sequenceShow/hide protein sequence
MTTVLPKDFILLGYGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEVASTSPAMSPNAELHLH