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Lsi06G005960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G005960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionheat stress transcription factor B-4b-like
Genome locationchr06:8176535..8177457
RNA-Seq ExpressionLsi06G005960
SyntenyLsi06G005960
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055968.1 heat stress transcription factor B-4b-like [Cucumis melo var. makuwa]4.6e-1275.86Show/hide
Query:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

TYK28179.1 heat stress transcription factor B-4b-like [Cucumis melo var. makuwa]4.6e-1275.86Show/hide
Query:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

XP_004139066.1 heat stress transcription factor B-4b [Cucumis sativus]3.2e-1379.31Show/hide
Query:  LITKYGSRLVPKLVELDPP-SPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELDPP SP P S EIR+EEGN MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELDPP-SPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

XP_008450326.1 PREDICTED: heat stress transcription factor B-4b-like [Cucumis melo]4.6e-1275.86Show/hide
Query:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

XP_023516316.1 heat stress transcription factor B-4b-like [Cucurbita pepo subsp. pepo]1.1e-1069.84Show/hide
Query:  KYGSRLVPKLVEL-DPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGG
        KYG R VPKLV+L  PP P P   E  VEEGN  VKLFGVPIRGKKRVH EE E+Q MS+HGG
Subjt:  KYGSRLVPKLVEL-DPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGG

TrEMBL top hitse value%identityAlignment
A0A0A0M2Y7 HSF_DOMAIN domain-containing protein1.5e-1379.31Show/hide
Query:  LITKYGSRLVPKLVELDPP-SPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELDPP SP P S EIR+EEGN MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELDPP-SPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

A0A1S3BPZ9 heat stress transcription factor B-4b-like2.2e-1275.86Show/hide
Query:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

A0A5A7ULL5 Heat stress transcription factor B-4b-like2.2e-1275.86Show/hide
Query:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

A0A5D3DXU1 Heat stress transcription factor B-4b-like2.2e-1275.86Show/hide
Query:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV
        L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Subjt:  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV

A0A6J1JGJ8 heat stress transcription factor B-4b-like6.1e-1066.67Show/hide
Query:  KYGSRLVPKLVEL-DPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGG
        KYG R VPKLV+L  PP P P   E  VEEG+  V+LFGVPIRGKKRVH EE E+Q MS+HGG
Subjt:  KYGSRLVPKLVEL-DPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCC
AAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAG
AAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGAT
ATACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCC
AAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAG
AAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGAT
ATACACTAA
Protein sequenceShow/hide protein sequence
MLSANARQPSSTTKKLQATIRASSDEESLLRHHLLHPNTTLNHLITKYGSRLVPKLVELDPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGGYD
IH