CuGenDBv2

Gene ID	Lsi06G006030
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	succinate dehydrogenase subunit 6, mitochondrial
Genome location	chr06:8303272..8306554
RNA-Seq Expression	Lsi06G006030
Synteny	Lsi06G006030
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590149.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-75

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSP++QR  PLPPWSSSDVEEFIA +PVHGPALKTAREAVNFGLTG+VIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        S LAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]

1.0e-75

94.48

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSPY+QRQTPLP WSSSDVEEFIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG
        SFLAGGVFGWTFG EIANHWYQLYRVDTM AQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

2.7e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PY+QR+ PLP WSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGGVFGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNKNEGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

3.5e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP++QR+ PLP WS SDVEEFIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+EGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

XP_038880701.1 succinate dehydrogenase subunit 6, mitochondrial [Benincasa hispida]

9.1e-77

93.88

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSI+DNYSPYIQRQT LPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSV+GAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAG  FGWTFGHEIANHWYQLYR+DTMGAQVKFMEWWRNK+EG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BP04 succinate dehydrogenase subunit 6, mitochondrial

3.2e-75

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPY+QR TPLP WSSSDVEEFIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG
        SFLAGG FGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG

A0A5D3DY28 Succinate dehydrogenase subunit 6

3.2e-75

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPY+QR TPLP WSSSDVEEFIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG
        SFLAGG FGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

1.3e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PY+QR+ PLP WSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGGVFGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNKNEGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

1.7e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP++QR+ PLP WS SDVEEFIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        SFLAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+EGRF
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

A0A6J1JGN4 succinate dehydrogenase subunit 6, mitochondrial-like

8.3e-76

91.84

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP++QR  PLPPWSSSDVEEFIA +PVHGP LKTAREAVNFGLTG+VIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGL

Query:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
        S L GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG F
Subjt:  SFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

3.5e-31

46.27

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Query:  KHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGVFGWT
        +H EG K  W++ FS LD +     R  PLP W+ +DV+EFIASDPV+GP LK  RE+  F L G+++G     G+A KYSK+ HG  L+   G + G  
Subjt:  KHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGVFGWT

Query:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG
         G E+A HWYQLY+ D  GA ++F+ WW +K  G
Subjt:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEG

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

3.0e-54

69.06

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ + +R  PLP WSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYS+S HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

2.1e-55

69.06

Show/hide

Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ + +R  PLP WSSSDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYS+S HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

Sequences

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CDS sequence

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ATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCCTACATCCAGCG
CCAGACCCCTCTTCCTCCGTGGTCTTCCTCCGATGTCGAGGAATTTATTGCTTCCGACCCCGTTCATGGCCCCGCTTTGAAGACTGCTAGAGAAGCTGTAAACTTTGGTC
TTACAGGAAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAAAAGTTTACATGGCGCTGGGCTGTCGTTCCTGGCGGGAGGTGTATTCGGTTGG
ACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTT
TTAA

mRNA sequence

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CACGAAACAACCTTCACTTTCCTCAGAAACACAAAACAAAACGAGCTTAGAAGAAGGAGATTGCAAAGCAAGAAGAACAGTCTTCGGAATTCTGATTTCAATCGGATTTA
GCTTCTAAAATCTCAACTCCTAATCTGTTTTTCGTGGGAGCAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGCTACAAGGAATTTTGGTC
CGAGAGATTCTCCATCCTCGACAACTATTCCCCCTACATCCAGCGCCAGACCCCTCTTCCTCCGTGGTCTTCCTCCGATGTCGAGGAATTTATTGCTTCCGACCCCGTTC
ATGGCCCCGCTTTGAAGACTGCTAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAAAAGTTTA
CATGGCGCTGGGCTGTCGTTCCTGGCGGGAGGTGTATTCGGTTGGACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGTGCACA
AGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTTTTAAAACTCTGATTTTGCAGTTGAAGCAGCGCACACTGCAGCTGCCATCGAAAATAAAAATGTAA
GTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTGTGCTGAACTCTTCCAACCTCTCAAGTTTAGAAAAGGACTGTATCCTTTTTTATCTTCTGGAAATGACT
GATTAATTTGCAAGCTTGCAAGAAATGTAGTCATCTTTACCAAATATCTCCAATCCTGGGTGTGTGTTAGGGTCTAAGGCATGTCCAAAATGGATACACTTATTTTGTTG
AAAGAATATTGGATAAATTATATATATAAGAAGGATAACCTTGAACTATGCCGGGTTAAAAAATGTCTATTCTTTTAAAAATTGCAATATTACTCTTGATCTTTTAAAAA
GGTTTCAAAATCGTCC

Protein sequence

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MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYIQRQTPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGVFGW
TFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF

Lsi06G006030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome