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Lsi06G006090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G006090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlial fibrillary acidic protein-like
Genome locationchr06:8457771..8459609
RNA-Seq ExpressionLsi06G006090
SyntenyLsi06G006090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025321.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.0e-2656.38Show/hide
Query:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ
        MN VLATENE+LR+EVK+  QQA + QR L++AKR   K+ ELE+E DSLN EAIQ++KKNKRLL +IA LH E EA+   I +LK E+E++N +   FQ
Subjt:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ

Query:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE
        +AL E+A SSQ+    +E LQ S + YKSQL EAE KN  LQ+AV ++E
Subjt:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE

KAA0032013.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]2.6e-3550.49Show/hide
Query:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ
        N K+H+AVEAWK VK+MKS RHCEGTT QYDNWRA+R+G+ +  M  SL  N      H ++EK+L+RL+EMN V+ATENE+LR+EVK+  QQA + QR 
Subjt:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ

Query:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS
        L++AKR   K  ELE+E DSLN EAIQ++KKNKRLL +IA LH E EA                                 +K   E+E LQ S K YKS
Subjt:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS

Query:  QLTEAE
        QL EA+
Subjt:  QLTEAE

KAA0065294.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.3e-2656.38Show/hide
Query:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ
        MN VLATENE+LR+EVK+  QQA + QR L++AKR   K+ ELE+E DSLN EAIQM+KKNKRLL +IA LH E EA+   I +LK E+E++N +A  FQ
Subjt:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ

Query:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE
        +AL E+A SSQ+    +E LQ   + YKSQL EA+ KN  LQ+AV ++E
Subjt:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE

KGN65327.1 hypothetical protein Csa_019964 [Cucumis sativus]4.8e-2964.06Show/hide
Query:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ
        M+ VLATENE LRKEVKR  Q+AT+++RQLE+A+R LQ+Q ELE++ +SLNIEAIQ++KKNKRLL DIA +H+EAEAQ   I+ELKQELER++KV   FQ
Subjt:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ

Query:  SALSEKAASSQKIVAEVESLQSSAKIYK
        SAL E+A SSQ+I  ++E+L + AK YK
Subjt:  SALSEKAASSQKIVAEVESLQSSAKIYK

TYK16834.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]2.6e-3550.49Show/hide
Query:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ
        N K+H+AVEAWK VK+MKS RHCEGTT QYDNWRA+R+G+ +  M  SL  N      H ++EK+L+RL+EMN V+ATENE+LR+EVK+  QQA + QR 
Subjt:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ

Query:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS
        L++AKR   K  ELE+E DSLN EAIQ++KKNKRLL +IA LH E EA                                 +K   E+E LQ S K YKS
Subjt:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS

Query:  QLTEAE
        QL EA+
Subjt:  QLTEAE

TrEMBL top hitse value%identityAlignment
A0A0A0LWU7 Uncharacterized protein2.3e-2964.06Show/hide
Query:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ
        M+ VLATENE LRKEVKR  Q+AT+++RQLE+A+R LQ+Q ELE++ +SLNIEAIQ++KKNKRLL DIA +H+EAEAQ   I+ELKQELER++KV   FQ
Subjt:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ

Query:  SALSEKAASSQKIVAEVESLQSSAKIYK
        SAL E+A SSQ+I  ++E+L + AK YK
Subjt:  SALSEKAASSQKIVAEVESLQSSAKIYK

A0A5A7SM49 Glial fibrillary acidic protein-like4.8e-2756.38Show/hide
Query:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ
        MN VLATENE+LR+EVK+  QQA + QR L++AKR   K+ ELE+E DSLN EAIQ++KKNKRLL +IA LH E EA+   I +LK E+E++N +   FQ
Subjt:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ

Query:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE
        +AL E+A SSQ+    +E LQ S + YKSQL EAE KN  LQ+AV ++E
Subjt:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE

A0A5A7SNY0 Glial fibrillary acidic protein-like1.3e-3550.49Show/hide
Query:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ
        N K+H+AVEAWK VK+MKS RHCEGTT QYDNWRA+R+G+ +  M  SL  N      H ++EK+L+RL+EMN V+ATENE+LR+EVK+  QQA + QR 
Subjt:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ

Query:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS
        L++AKR   K  ELE+E DSLN EAIQ++KKNKRLL +IA LH E EA                                 +K   E+E LQ S K YKS
Subjt:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS

Query:  QLTEAE
        QL EA+
Subjt:  QLTEAE

A0A5A7VDD9 Glial fibrillary acidic protein-like6.3e-2756.38Show/hide
Query:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ
        MN VLATENE+LR+EVK+  QQA + QR L++AKR   K+ ELE+E DSLN EAIQM+KKNKRLL +IA LH E EA+   I +LK E+E++N +A  FQ
Subjt:  MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQ

Query:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE
        +AL E+A SSQ+    +E LQ   + YKSQL EA+ KN  LQ+AV ++E
Subjt:  SALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE

A0A5D3D0S2 Glial fibrillary acidic protein-like1.3e-3550.49Show/hide
Query:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ
        N K+H+AVEAWK VK+MKS RHCEGTT QYDNWRA+R+G+ +  M  SL  N      H ++EK+L+RL+EMN V+ATENE+LR+EVK+  QQA + QR 
Subjt:  NVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQ

Query:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS
        L++AKR   K  ELE+E DSLN EAIQ++KKNKRLL +IA LH E EA                                 +K   E+E LQ S K YKS
Subjt:  LEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKS

Query:  QLTEAE
        QL EA+
Subjt:  QLTEAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGC
TTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAATGTCAAGGTTCATAAAG
CAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCT
ATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAA
TGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAG
AAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATT
AAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAG
TTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGC
TTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAATGTCAAGGTTCATAAAG
CAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCT
ATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAA
TGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAG
AAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATT
AAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAG
TTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA
Protein sequenceShow/hide protein sequence
MVDTHAPEVFAQTIPSEDSWEGVAQWSEQLQQESGFAWPRRSEVSLLQSPRLEFVNNDSEDLKGLWENVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVA
IMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYI
KELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAEH