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Lsi06G006100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G006100
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlial fibrillary acidic protein-like
Genome locationchr06:8459637..8459927
RNA-Seq ExpressionLsi06G006100
SyntenyLsi06G006100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025321.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]3.7e-2663.92Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD    ++E+GAEKLRQMA +AD+F++QA TLRQ +IPTR    ELS FLGIIG  LGRFGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
KAA0033848.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]4.1e-2560.82Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        +VT+D+ +LK +++E+  DFAIWRDEYNI+R  Y+ V+GQIEQG +KLR MAR AD+F+ +   L+QDI+P + GS ELSRFLGIIG  LG FGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
KAA0046606.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]7.4e-2764.95Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD   G++E+GAEKLRQMAR+AD+F++QA TLRQ +IPTR    ELS FLGIIG  LGRF CYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
KAA0065294.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]2.5e-2764.95Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++ DDY QL +KYQEMS DF +W+DEY  LR+ YD   G++E+GAEKLRQMAR+AD+F++QA TLRQ +IPTR    ELS FLGIIG  LGRFGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
TYK27025.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.5e-2765.98Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD   G++E+GAEKLRQMAR+AD+F +QA TLRQ +IPTR    ELS FLGIIG  LGRFGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
TrEMBL top hitse value%identityAlignment
A0A5A7SM49 Glial fibrillary acidic protein-like1.8e-2663.92Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD    ++E+GAEKLRQMA +AD+F++QA TLRQ +IPTR    ELS FLGIIG  LGRFGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
A0A5A7TXA1 Glial fibrillary acidic protein-like3.6e-2764.95Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD   G++E+GAEKLRQMAR+AD+F++QA TLRQ +IPTR    ELS FLGIIG  LGRF CYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
A0A5A7VDD9 Glial fibrillary acidic protein-like1.2e-2764.95Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++ DDY QL +KYQEMS DF +W+DEY  LR+ YD   G++E+GAEKLRQMAR+AD+F++QA TLRQ +IPTR    ELS FLGIIG  LGRFGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
A0A5D3BQ93 Glial fibrillary acidic protein-like2.0e-2560.82Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        +VT+D+ +LK +++E+  DFAIWRDEYNI+R  Y+ V+GQIEQG +KLR MAR AD+F+ +   L+QDI+P + GS ELSRFLGIIG  LG FGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
A0A5D3DUN1 Glial fibrillary acidic protein-like7.2e-2865.98Show/hide
Query:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
        ++TDDY QL +KYQEMS DF +W+DEY  LR+ YD   G++E+GAEKLRQMAR+AD+F +QA TLRQ +IPTR    ELS FLGIIG  LGRFGCYH
Subjt:  MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGD-LGRFGCYH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACAGACGACTATGGCCAGTTGAAGAAAAAGTATCAAGAAATGTCAGAAGATTTTGCTATATGGAGGGACGAGTATAACATATTGAGGCAGAATTATGACAGCGT
CAGAGGACAGATAGAGCAAGGAGCCGAGAAGCTAAGACAGATGGCAAGGATGGCAGATCGGTTCGCATTACAAGCTACAACCCTCCGACAAGACATCATACCTACGCGGC
CTGGCAGTAGCGAGTTATCTCGTTTTCTAGGGATCATAGGGGACCTAGGGCGTTTTGGGTGCTATCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACAGACGACTATGGCCAGTTGAAGAAAAAGTATCAAGAAATGTCAGAAGATTTTGCTATATGGAGGGACGAGTATAACATATTGAGGCAGAATTATGACAGCGT
CAGAGGACAGATAGAGCAAGGAGCCGAGAAGCTAAGACAGATGGCAAGGATGGCAGATCGGTTCGCATTACAAGCTACAACCCTCCGACAAGACATCATACCTACGCGGC
CTGGCAGTAGCGAGTTATCTCGTTTTCTAGGGATCATAGGGGACCTAGGGCGTTTTGGGTGCTATCACTAG
Protein sequenceShow/hide protein sequence
MVTDDYGQLKKKYQEMSEDFAIWRDEYNILRQNYDSVRGQIEQGAEKLRQMARMADRFALQATTLRQDIIPTRPGSSELSRFLGIIGDLGRFGCYH