CuGenDBv2

Gene ID	Lsi06G006230
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein TIC 214
Genome location	chr06:8895862..8898752
RNA-Seq Expression	Lsi06G006230
Synteny	Lsi06G006230
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0009706 - chloroplast inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR008896 - Protein TIC214

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QJD26342.1 Ycf1 [Trichosanthes kirilowii]

4.5e-24

97.3

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Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

YP_009738261.1 Ycf1 [Siraitia siamensis]

4.5e-24

97.3

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Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

YP_009752373.1 Ycf1 protein [Bryonia marmorata]

4.5e-24

97.3

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Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

YP_009752639.1 Ycf1 protein [Trichosanthes homophylla]

4.5e-24

97.3

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Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

YP_009753666.1 Ycf1 protein [Trichosanthes wallichiana]

4.5e-24

97.3

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Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

TrEMBL top hits

e value

%identity

Alignment

A0A515BLT2 Protein TIC 214

2.2e-24

97.3

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

A0A6M3RU58 Protein TIC 214

2.2e-24

97.3

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

A0A6M3RWE9 Protein TIC 214

2.2e-24

97.3

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

A0A6M3S424 Protein TIC 214

2.2e-24

97.3

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

A0A6M3S6W7 Protein TIC 214

2.2e-24

97.3

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

SwissProt top hits

e value

%identity

Alignment

A6MM95 Protein TIC 214

1.5e-22

87.84

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        R+P+PIVTKKLKET +TEE GESEEE DVEIETTSETKGTKQEQE STEED SPSL SEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

A6MMG9 Protein TIC 214

3.3e-22

89.19

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSET+GT++EQEGSTEED  PSL SEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

Q06GT8 Protein TIC 214

6.7e-23

90.54

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPIVTKKLKET ETEE GESEEETDVEIETTSETKGTKQEQEGSTEED  PS  SEEKEDPDK+DETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

Q0ZIW0 Protein TIC 214

4.6e-24

90.54

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPI+TKK+KET ETEE GESEEETDVEIE TSETKGTKQEQE STEED SPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

Q4VZL0 Protein TIC 214

1.5e-22

87.84

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPI  K+  +T ET ET ESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

Arabidopsis top hits

e value

%identity

Alignment

ATCG01000.1 Ycf1 protein

3.7e-08

58.11

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPI TKKLK                     TSET GTKQ+QE STEE   PSLFSEE ED DKIDE EEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

ATCG01130.1 Ycf1 protein

3.7e-08

58.11

Show/hide

Query:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR
        RIPSPI TKKLK                     TSET GTKQ+QE STEE   PSLFSEE ED DKIDE EEIR
Subjt:  RIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAACGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACGGAGGAAACGGAGGAAACGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCAC
TTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGG
AAGAGATCCGACATCGCCGGTCACCGCCAATGAGCTATCGACGACGTGGCATCAAACCAAAAAAAGTTGCATACGCTGGGGTTCAAACCCGTGCCATAGGACAATGGAAA
ACATACAGCTTGACCCCTGGACTACCCAGGATTTTCAATATAATGAATACTAAAACGTTCATACCTATCAATTTGAGCATCACTGACATTATACGAAGAGGTTCCATGAT
AATCATACAGATAAATAAAGCCAATAAAAAACTGCTTGATAACAAGGACTTCAATTCAGTAAAGAAATTCAAACATTTGGTATCAAAAGTAAGATTTGGAAGCTCTTGCT
TCTCTTCTTCGAACTCAGTTGTTTCATCCGCATATCCATATGAAACTGTAGTATCAACAGATATTAAACAATCCAGCGTAGTTTCCGCAACCAGTGAAATGCCAAACCCA
GGCATTCAAGGATTGAACTTCAACGGTGTGAATTCAAAGGAGAAAGAAAACGTACTTTCCAGCTCGAGGTCCCTTTCTATGATCAGTACCTATATGCACATCTGGAAGCA
GGCGATTAAACACTCCACGAGCTGCAGTTATCATAGCATGCTCAAACTGAGAAGACACTCTAGTTGA

mRNA sequence

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Protein sequence

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MKRRIPSPIVTKKLKETEETEETGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRHRRSPPMSYRRRGIKPKKVAYAGVQTRAIGQWK
TYSLTPGLPRIFNIMNTKTFIPINLSITDIIRRGSMIIIQINKANKKLLDNKDFNSVKKFKHLVSKVRFGSSCFSSSNSVVSSAYPYETVVSTDIKQSSVVSATSEMPNP
GIQGLNFNGVNSKEKENVLSSSRSLSMISTYMHIWKQAIKHSTSCSYHSMLKLRRHSS

Lsi06G006230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome