CuGenDBv2

Gene ID	Lsi06G006250
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	coiled-coil domain-containing protein R3HCC1L
Genome location	chr06:8906056..8908289
RNA-Seq Expression	Lsi06G006250
Synteny	Lsi06G006250
Gene Ontology terms	NA
InterPro domains	IPR039884 - Coiled-coil domain-containing protein R3HC1/R3HCL

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022961195.1 coiled-coil domain-containing protein R3HCC1L [Cucurbita moschata]

6.0e-55

83.67

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+Q+RRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDIAAKALVLKQQ QVSS  G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS  SVDEASVG G  DHTRDCP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

XP_022988104.1 coiled-coil domain-containing protein R3HCC1L isoform X1 [Cucurbita maxima]

6.6e-54

82.31

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+++RRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDI AKALVLKQ  QVSSP G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS   VDEASVGTG  DHTR+CP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

XP_022988105.1 coiled-coil domain-containing protein R3HCC1L isoform X2 [Cucurbita maxima]

6.6e-54

82.31

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+++RRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDI AKALVLKQ  QVSSP G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS   VDEASVGTG  DHTR+CP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

XP_023516771.1 coiled-coil domain-containing protein R3HCC1L [Cucurbita pepo subsp. pepo]

6.4e-57

85.71

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+Q+RRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDIAAKALVLKQQ QVSSP G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TVSLSS  SVDEASVGTG  DHTRDCP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

XP_038878405.1 coiled-coil domain-containing protein R3HCC1L isoform X1 [Benincasa hispida]

3.6e-60

78.49

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MDNEEE+QRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTS+NCNPDPQLA+ALTDLS LYSSKGLSLKADDIAAKALVLKQQAQVS PTG+AK +K
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDDGIGSLRLLLIWEMVTGSGLWRIVPL
        EDRTSPTT+SLSS YSVDEASVGTG  DHTRD P+NAV CDG LDDD          WE +       ++PL
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDDGIGSLRLLLIWEMVTGSGLWRIVPL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXV6 Uncharacterized protein

1.0e-63

68.84

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD E+E Q  RSNWSETVEDLVTAGDTDAAISLL+SVVSDLQTS+N NPDPQLA+ALTDLS LYSSKGLSLKADDIAAKA +LK QAQVS PTGY KI+ 
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDDGIGSL---------------RLLLIWEMVTGSGLW---RIVPLWQTSCISFWL
        EDRTSPTTVSLS   SVDEASVGTG  D TRD P+NAV C   LDDD    L               +  LI E     G     +IVPLWQTSC SFWL
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDDGIGSL---------------RLLLIWEMVTGSGLW---RIVPLWQTSCISFWL

Query:  VFNLPQMLVSKQPDL
        VFNLPQ +VSKQ DL
Subjt:  VFNLPQMLVSKQPDL

A0A6J1H9N8 coiled-coil domain-containing protein R3HCC1L

2.9e-55

83.67

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+Q+RRSNWSETVEDLVTAGDTDAAISLLESV+SDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDIAAKALVLKQQ QVSS  G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS  SVDEASVG G  DHTRDCP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

A0A6J1JC58 coiled-coil domain-containing protein R3HCC1L isoform X3

3.2e-54

82.31

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+++RRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDI AKALVLKQ  QVSSP G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS   VDEASVGTG  DHTR+CP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

A0A6J1JIN7 coiled-coil domain-containing protein R3HCC1L isoform X2

3.2e-54

82.31

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+++RRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDI AKALVLKQ  QVSSP G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS   VDEASVGTG  DHTR+CP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

A0A6J1JLB3 coiled-coil domain-containing protein R3HCC1L isoform X4

3.2e-54

82.31

Show/hide

Query:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK
        MD EEE+++RRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSEN NPDPQLA+ALTDLS LYSSKG SLKADDI AKALVLKQ  QVSSP G+AKIVK
Subjt:  MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVK

Query:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD
        EDRTS  TV+LSS   VDEASVGTG  DHTR+CP+NAVPCD   DDD
Subjt:  EDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G22120.1 unknown protein

3.0e-12

36.42

Show/hide

Query:  NEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQ-------TSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGY
        NEEE +    NWSE VEDLV AGD  AAIS LES+ ++LQ       + E      QL++ALT L+ LYSS+GLSLK+D++  ++ ++KQ+A        
Subjt:  NEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQ-------TSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGY

Query:  AKIVKEDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDD
              +  S  +  L S  +V       GK++ ++    N+   D   DD
Subjt:  AKIVKEDRTSPTTVSLSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACAATGAAGAAGAACAGCAACGCCGGCGATCTAACTGGAGCGAGACTGTGGAGGACCTCGTCACTGCCGGAGACACTGATGCTGCAATTTCTCTTCTTGAATCGGT
GGTTTCCGACCTCCAAACTTCAGAAAACTGTAATCCAGATCCTCAATTGGCTTCCGCCCTCACCGACTTGTCTGTTCTCTACTCTTCTAAAGGCCTCTCTCTCAAAGCCG
ACGACATTGCGGCTAAAGCTTTGGTTCTTAAACAACAAGCCCAAGTCTCTTCTCCTACTGGGTACGCGAAGATTGTAAAAGAGGATCGAACTTCACCCACAACTGTGTCG
CTGTCTTCTCGTTATTCTGTCGATGAAGCGTCCGTTGGAACTGGTAAGTCTGATCATACGAGGGATTGTCCAGAAAATGCTGTACCCTGTGATGGGCCTTTGGATGATGA
TGGAATTGGAAGTCTAAGGTTACTATTAATCTGGGAGATGGTCACAGGATCGGGTCTTTGGAGGATTGTGCCATTATGGCAAACCTCTTGTATTTCTTTTTGGCTAGTCT
TTAACCTACCACAAATGCTGGTGTCAAAACAACCAGACCTGGAACTTTTA

mRNA sequence

Show/hide mRNA sequence

CACATTTCTCATTGAGTAAAATAAATAAAATCGATGTTATTTAGAAAAAGCTATATAAACAAGGGGAGAAACAGAGCTCATTCATGGCGTGCGAGCGAGAGATATTAATG
AACTTTCTGCACTGTTTTCACTAAGAATCTCTGAATCTCATCTTCTTCCATTGTTAAAGAATCAACCAGAGCCATGGACAATGAAGAAGAACAGCAACGCCGGCGATCTA
ACTGGAGCGAGACTGTGGAGGACCTCGTCACTGCCGGAGACACTGATGCTGCAATTTCTCTTCTTGAATCGGTGGTTTCCGACCTCCAAACTTCAGAAAACTGTAATCCA
GATCCTCAATTGGCTTCCGCCCTCACCGACTTGTCTGTTCTCTACTCTTCTAAAGGCCTCTCTCTCAAAGCCGACGACATTGCGGCTAAAGCTTTGGTTCTTAAACAACA
AGCCCAAGTCTCTTCTCCTACTGGGTACGCGAAGATTGTAAAAGAGGATCGAACTTCACCCACAACTGTGTCGCTGTCTTCTCGTTATTCTGTCGATGAAGCGTCCGTTG
GAACTGGTAAGTCTGATCATACGAGGGATTGTCCAGAAAATGCTGTACCCTGTGATGGGCCTTTGGATGATGATGGAATTGGAAGTCTAAGGTTACTATTAATCTGGGAG
ATGGTCACAGGATCGGGTCTTTGGAGGATTGTGCCATTATGGCAAACCTCTTGTATTTCTTTTTGGCTAGTCTTTAACCTACCACAAATGCTGGTGTCAAAACAACCAGA
CCTGGAACTTTTA

Protein sequence

Show/hide protein sequence

MDNEEEQQRRRSNWSETVEDLVTAGDTDAAISLLESVVSDLQTSENCNPDPQLASALTDLSVLYSSKGLSLKADDIAAKALVLKQQAQVSSPTGYAKIVKEDRTSPTTVS
LSSRYSVDEASVGTGKSDHTRDCPENAVPCDGPLDDDGIGSLRLLLIWEMVTGSGLWRIVPLWQTSCISFWLVFNLPQMLVSKQPDLELL

Lsi06G006250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome